Methods for analyzing DNA copy-number data. Specifically,
this package implements the multi-source copy-number normalization (MSCN)
method for normalizing copy-number data obtained on various platforms and
technologies. It also implements the TumorBoost method for normalizing
paired tumor-normal SNP data.
| Version: |
1.7.1 |
| Depends: |
R (≥ 3.1.2), R.utils (≥ 2.11.0), aroma.core (≥ 3.2.2) |
| Imports: |
R.methodsS3 (≥ 1.8.1), R.oo (≥ 1.24.0), R.filesets (≥
2.14.0), R.cache (≥ 0.15.0), matrixStats (≥ 0.61.0), PSCBS (≥ 0.65.0), future.apply |
| Suggests: |
aroma.light (≥ 2.2.1), DNAcopy (≥ 1.40.0), GLAD (≥ 1.12.0) |
| Published: |
2024-02-17 |
| DOI: |
10.32614/CRAN.package.aroma.cn |
| Author: |
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut] |
| Maintainer: |
Henrik Bengtsson <henrikb at braju.com> |
| BugReports: |
https://github.com/HenrikBengtsson/aroma.cn/issues |
| License: |
LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: |
https://www.aroma-project.org/,
https://github.com/HenrikBengtsson/aroma.cn |
| NeedsCompilation: |
no |
| Citation: |
aroma.cn citation info |
| Materials: |
NEWS |
| In views: |
Omics |
| CRAN checks: |
aroma.cn results |