Last updated on 2025-11-24 00:48:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 34.74 | 771.71 | 806.45 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 21.18 | 493.49 | 514.67 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 77.00 | 1222.38 | 1299.38 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 155.00 | 1180.17 | 1335.17 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 44.00 | 529.00 | 573.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 51.71 | 712.35 | 764.06 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.90 | 719.55 | 756.45 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 37.00 | 531.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 515.00 | 554.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 9.00 | 111.00 | 120.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 71.00 | 966.00 | 1037.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 53.00 | 645.00 | 698.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [438s/218s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-11-22 16:12:30.232359: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.233057: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.243508: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.263711: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:30.314084: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.314538: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.322394: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.346589: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:30.37029: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.370896: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.384507: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.431091: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:30.432277: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:30.457181: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.457661: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.472389: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.518709: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:30.519943: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:30.605971: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.606414: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.641751: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:30.744873: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:30.777544: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:30.778197: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:30.808877: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.011988: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.016407: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.153255: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.155127: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.162551: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.181881: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.21362: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.214286: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.240543: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.283584: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.286432: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.41966: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.422407: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.429835: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.449253: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.493159: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.493842: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.508025: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.554907: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.556088: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.629682: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.630115: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.637001: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.654894: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.743954: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.744621: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.774234: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.82285: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:31.824104: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:31.906486: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.90695: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:31.915493: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:31.935722: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:31.986528: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:31.987262: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.001921: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.046196: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:32.047416: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:32.12589: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.126355: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.13389: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.153006: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:32.199826: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.200462: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.226701: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.27192: embedding
> test_pipeop_isomap.R: 2025-11-22 16:12:32.273197: DONE
> test_pipeop_isomap.R: 2025-11-22 16:12:32.357986: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.358428: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.365198: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.383211: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:32.459232: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.459711: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.468831: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.488058: Classical Scaling
> test_pipeop_isomap.R: 2025-11-22 16:12:32.511642: Isomap START
> test_pipeop_isomap.R: 2025-11-22 16:12:32.512089: constructing knn graph
> test_pipeop_isomap.R: 2025-11-22 16:12:32.519428: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-22 16:12:32.538722: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.2977876')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-24 08:40:07.233716: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.233936: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.236965: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.243058: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.267007: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.267143: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.269172: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.274384: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.281738: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.281933: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.286354: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.300977: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.301377: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.30661: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.306749: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.311179: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.326039: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.326436: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.34547: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.345613: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.350039: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.384149: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.391957: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.392132: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.400255: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.48026: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.481345: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.513863: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.513993: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.516354: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.522321: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.529151: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.529333: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.53363: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.548664: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.549052: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.57726: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.577399: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.579849: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.585833: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.595638: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.5958: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.600231: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.614971: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.62217: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.643994: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.644114: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.646336: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.652425: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.662636: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.662807: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.667701: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.682999: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.683438: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.700349: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.700485: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.702998: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.709099: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.719907: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.720111: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.724426: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.738915: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.739314: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.757054: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.757173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.759196: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.765046: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.77602: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.776209: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.780918: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.795867: embedding
> test_pipeop_isomap.R: 2025-11-24 08:40:07.796349: DONE
> test_pipeop_isomap.R: 2025-11-24 08:40:07.815238: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.815368: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.817741: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.824129: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.84131: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.841443: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.843822: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.849785: Classical Scaling
> test_pipeop_isomap.R: 2025-11-24 08:40:07.855214: Isomap START
> test_pipeop_isomap.R: 2025-11-24 08:40:07.855362: constructing knn graph
> test_pipeop_isomap.R: 2025-11-24 08:40:07.857628: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-24 08:40:07.863748: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [434s/597s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-23 15:23:19.715742: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:19.716503: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:19.732299: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:19.800545: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:19.909657: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:19.924738: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:19.936376: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:19.982515: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:20.048738: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:20.049245: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:20.114123: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:20.206055: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:20.218248: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:20.261907: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:20.262265: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:20.290258: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:20.397483: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:20.399202: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:20.552467: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:20.552763: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:20.593189: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:20.783109: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:22.559193: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:22.56094: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:22.655252: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:23.151803: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:23.165545: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:23.448086: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:23.448388: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:23.503775: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:23.547733: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:23.587131: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:23.587578: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:23.646615: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:23.775292: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:23.776441: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:24.103608: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:24.10696: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:24.119131: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:24.167321: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:24.237044: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:24.237935: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:24.265119: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:24.340722: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:24.342349: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:24.535283: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:24.535736: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:24.557835: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:24.61703: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:24.922344: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:24.922943: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:24.953254: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:25.077611: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:25.078828: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:25.26985: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:25.270633: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:25.299813: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:25.366975: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:25.470583: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:25.471204: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:25.519326: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:25.6094: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:25.610949: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:25.764442: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:25.764775: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:25.793047: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:25.87594: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:25.986817: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-23 15:23:25.987643: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:26.044151: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:26.128734: embedding
> test_pipeop_isomap.R: 2025-11-23 15:23:26.130204: DONE
> test_pipeop_isomap.R: 2025-11-23 15:23:26.319742: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:26.320058: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:26.336381: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:26.433482: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:26.605872: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:26.6062: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:26.649264: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:26.683447: Classical Scaling
> test_pipeop_isomap.R: 2025-11-23 15:23:26.807932: Isomap START
> test_pipeop_isomap.R: 2025-11-23 15:23:26.808662: constructing knn graph
> test_pipeop_isomap.R: 2025-11-23 15:23:26.895588: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-23 15:23:27.015021: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_proxy.R:14:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3',
'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [270s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-16 03:27:01.982434: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:01.983153: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:01.995516: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:02.01199: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:02.057452: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:02.057935: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:02.066507: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:02.082844: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:02.1134: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:02.114092: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:02.156848: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:02.206497: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:02.208196: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:02.248128: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:02.248816: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:02.268629: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:02.318416: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:02.32011: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:02.464607: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:02.465265: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:02.48477: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:02.591956: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:02.663726: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:02.664898: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:02.721456: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:02.956021: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:02.961961: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:03.291968: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:03.29261: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:03.303667: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:03.325757: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:03.369232: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:03.37016: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:03.394197: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:03.443947: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:03.446059: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:03.644498: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:03.645208: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:03.657452: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:03.679659: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:03.752246: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:03.753278: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:03.788936: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:03.840733: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:03.842755: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:03.955414: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:03.956076: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:03.966105: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:03.987585: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:04.061962: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:04.062987: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:04.087189: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:04.140836: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:04.825816: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:04.932052: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:04.932738: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:04.94408: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:04.966828: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:05.024476: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:05.025659: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:05.048837: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:05.094034: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:05.095981: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:05.208698: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:05.209449: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:05.222781: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:05.244944: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:05.323859: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-16 03:27:05.32474: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:05.346452: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:05.393299: embedding
> test_pipeop_isomap.R: 2025-11-16 03:27:05.395591: DONE
> test_pipeop_isomap.R: 2025-11-16 03:27:05.528762: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:05.529409: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:05.54168: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:05.564003: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:05.675261: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:05.675909: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:05.688727: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:05.711632: Classical Scaling
> test_pipeop_isomap.R: 2025-11-16 03:27:05.745678: Isomap START
> test_pipeop_isomap.R: 2025-11-16 03:27:05.746311: constructing knn graph
> test_pipeop_isomap.R: 2025-11-16 03:27:05.757836: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-16 03:27:05.780391: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64