CRAN Package Check Results for Maintainer ‘Michael P. Fay <mfay at niaid.nih.gov>’

Last updated on 2025-05-09 01:50:42 CEST.

Package NOTE OK
asht 13
binseqtest 2 11
bpcp 2 11
choplump 2 11
csci 2 11
exact2x2 6 7
exactci 6 7
hbim 13
interval 13
MChtest 13
nivm 6 7
oceCens 13
perm 2 11
rateratio.test 2 11
saws 2 11
ssanv 2 11

Package asht

Current CRAN status: NOTE: 13

Version: 1.0.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: Rd files
Result: NOTE checkRd: (-1) signTest.Rd:29: Lost braces 29 | code{stat="ud"} gives 0, and \code{stat="cpp"} gives 0.5). | ^ checkRd: (-1) simulateSS.Rd:46: Lost braces; missing escapes or markup? 46 | and the total number of batches, $b_{tot}$. | ^ checkRd: (-1) simulateSS.Rd:48: Lost braces; missing escapes or markup? 48 | Then we use a normal approximation to estimate the target sample size, say $N_{norm}$. In step 2, we replicate $m$ data sets with sample size $N_2 = N_{norm}$ | ^ checkRd: (-1) simulateSS.Rd:48: Lost braces; missing escapes or markup? 48 | Then we use a normal approximation to estimate the target sample size, say $N_{norm}$. In step 2, we replicate $m$ data sets with sample size $N_2 = N_{norm}$ | ^ checkRd: (-1) simulateSS.Rd:49: Lost braces; missing escapes or markup? 49 | to get the associated proportion of rejections, say $P_2$. We repeat 2 more batches with $N_3=N_{norm}/2$ and $N_4=2 N_{norm}$, | ^ checkRd: (-1) simulateSS.Rd:49: Lost braces; missing escapes or markup? 49 | to get the associated proportion of rejections, say $P_2$. We repeat 2 more batches with $N_3=N_{norm}/2$ and $N_4=2 N_{norm}$, | ^ checkRd: (-1) simulateSS.Rd:51: Lost braces; missing escapes or markup? 51 | the sample size at the target power, $N_{target}$. We use that estimate of $N_{target}$ for our sample size for the next | ^ checkRd: (-1) simulateSS.Rd:51: Lost braces; missing escapes or markup? 51 | the sample size at the target power, $N_{target}$. We use that estimate of $N_{target}$ for our sample size for the next | ^ checkRd: (-1) simulateSS.Rd:53: Lost braces; missing escapes or markup? 53 | Wu (1985, see Section 3). Step 4 is iterative, for the $i$th batch we repeat the isotonic regression, except now with $N_i$ estimated from the first $(i-1)$ observation pairs. We repeat step 4 until either the number of batches is $b_{tot}$, | ^ checkRd: (-1) simulateSS.Rd:56: Lost braces; missing escapes or markup? 56 | current sample size estimate, otherwise add 1. Continue with that up-and-down-like method until we reach the number of batches equal to $b_{tot}$. The up-and-down-like method was added because sometimes the algorithm would get stuck in too large of a sample size estimate. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: meldCD.Rd: binomMeld.test signTest.Rd: mcnemarExactDP, binom.exact wmwTest.Rd: wilcox_test wsrTest.Rd: wilcoxsign_test Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package binseqtest

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Jenn", family = "Kirk", role = "aut"), person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package bpcp

Current CRAN status: NOTE: 2, OK: 11

Version: 1.4.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov"), person(given = "Allyson", family = "Mateja", role = "ctb")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package choplump

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package csci

Current CRAN status: NOTE: 2, OK: 11

Version: 0.9.3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Sungwook", family = "Kim", role = "aut"), person(given = c("Michael", "P."), family = "Fay", role = "cre", email = "mfay@niaid.nih.gov")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package exact2x2

Current CRAN status: NOTE: 6, OK: 7

Version: 1.6.9
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov"), person(given = c("Sally", "A."), family = "Hunsberger", role = "ctb"), person(given = "Martha", family = "Nason", role = "ctb"), person(given = "Erin", family = "Gabriel", role = "ctb"), person(given = "Keith", family = "Lumbard", role = "ctb")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.6.9
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: power2x2.Rd: uniroot.integer, ss.nonadh unirootGrid.Rd: uniroot.integer Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package exactci

Current CRAN status: NOTE: 6, OK: 7

Version: 1.4-4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.4-4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: powerBinom.Rd: uniroot.integer Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package hbim

Current CRAN status: NOTE: 13

Version: 1.1.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1.2
Check: Rd files
Result: NOTE checkRd: (-1) deff.sigma.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) deff.sigma.Rd:35: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package interval

Current CRAN status: NOTE: 13

Version: 1.1-1.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1-1.0
Check: Rd files
Result: NOTE checkRd: (-1) interval-internal.Rd:40: Lost braces 40 | \item{dqfunc}{function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores, | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package MChtest

Current CRAN status: NOTE: 13

Version: 1.0-3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0-3
Check: Rd files
Result: NOTE checkRd: (-1) MCbound.precalc1.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCbound.precalc1.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) MCtest.Rd:39: Escaped LaTeX specials: \# checkRd: (-1) MCtest.Rd:40: Escaped LaTeX specials: \# Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package nivm

Current CRAN status: NOTE: 6, OK: 7

Version: 0.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: nicqControl.Rd: bpcp, quantile.kmciLR nicqTest.Rd: bpcp, quantile.kmciLR powerNicqTest.Rd: uniroot.integer Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package oceCens

Current CRAN status: OK: 13

Package perm

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0-0.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Michael", family = "Fay", role = "aut"), person(given = c("Michael", "P."), family = "Fay", role = "cre", email = "mfay@niaid.nih.gov")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package rateratio.test

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Michael", family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package saws

Current CRAN status: NOTE: 2, OK: 11

Version: 0.9-7.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package ssanv

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Michael", "P."), family = "Fay", role = c("aut", "cre"), email = "mfay@niaid.nih.gov") as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc