Last updated on 2025-11-03 00:50:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.4 | 58.18 | 446.86 | 505.04 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.4 | 40.10 | 323.85 | 363.95 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.4 | 275.00 | 570.70 | 845.70 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.4 | 377.00 | 475.53 | 852.53 | OK | |
| r-devel-windows-x86_64 | 1.2.4 | 58.00 | 369.00 | 427.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.4 | 0.34 | 1.96 | 2.30 | ERROR | |
| r-release-linux-x86_64 | 1.2.4 | 50.80 | 427.35 | 478.15 | ERROR | |
| r-release-macos-arm64 | 1.2.4 | 26.00 | 176.00 | 202.00 | OK | |
| r-release-macos-x86_64 | 1.2.4 | 71.00 | 342.00 | 413.00 | OK | |
| r-release-windows-x86_64 | 1.2.4 | 58.00 | 360.00 | 418.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.2.4 | 25.00 | 168.00 | 193.00 | OK | |
| r-oldrel-macos-x86_64 | 1.2.4 | 36.00 | 238.00 | 274.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.4 | 79.00 | 526.00 | 605.00 | OK |
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in ‘geneHapR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
>
> ### ** Examples
>
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+ gff = gff,
+ Chr = hapResult[1,2],
+ start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end, :
Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error: ‘there is no package called ‘GenomeInfoDb’’
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package ‘GenomeInfoDb’
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in ‘geneHapR-Ex.R’ failed
The error most likely occurred in:
> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
>
> ### ** Examples
>
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+ gff = gff,
+ Chr = hapResult[1,2],
+ start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end, :
Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error: ‘there is no package called ‘GenomeInfoDb’’
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package ‘GenomeInfoDb’
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64
Version: 1.2.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘rtracklayer’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-linux-x86_64