12d0797911887aeaf400b00ecbb0499f *DESCRIPTION
abb208679be398a9c61b0459e3b1dd99 *LICENSE
43f86bb5369579a242aa1df218d422c7 *NAMESPACE
7c0a6cd5315de2eb2133df159c3e7d8c *NEWS.md
6f98344f8e48f9e52ecab6140e8ddff4 *R/capture_session.R
770609519159d8089d16642f2571302b *R/conda_support.R
53fd2127b75fe7562f10ac08775aab0b *R/data_provenance.R
881bf2d6059648c51720d520fe97287f *R/docker_generation.R
19337f30ccb2732c1aaf28f5ae58d6c1 *R/external_tools.R
3b95e6bb5ec95deaf537a9b53cfef6b0 *R/package_tracking.R
bd60542ee5199c3c3c0c45136413b5be *R/param_tracking.R
e8e88bad87e509d19e10ba9a8131eecc *R/pipeline_hooks.R
4315d03795ea2d6beb18a3d1e3d3b8d6 *R/reference_tracking.R
2c8bfbec4cc3e3b11406bc81e6f98d22 *R/script_generation.R
7704614d9a051d0c969e4b188f241431 *R/singularity_generation.R
596c16bb856f5432b9a9a9236316a85a *R/snapshot_comparison.R
d469c7fd2c8ca75b0e4e1bcf42897d2e *R/workflow.R
1dd4bb62e600d11ac57953bc21756588 *README.md
be938ea7026531b8faa698f78ea1b850 *inst/examples/example.R
3f39630ff525cdc1398bb54271ee265f *man/capture_environment.Rd
3fce73f7923d03b07508083512a51dc5 *man/capture_hardware.Rd
633203c617aa949aef368dee77681197 *man/capture_session.Rd
b022218c66d0975421b41bc82facd168 *man/capture_system_libraries.Rd
3a03781a5eff5d78b51892b43aff2278 *man/compare_snapshots.Rd
6f472c0900b2c95308037aeb6eda6cc3 *man/create_renv_lockfile.Rd
6b96ba2deaa7b283400183f5d648842f *man/create_repro_report.Rd
3e03c996298dbf51c2075fa2cecaaa34 *man/dot-build_dependency_graph.Rd
f6e2ae9bd463bfb47d57295a6fa118d1 *man/dot-calculate_checksum.Rd
a644abbdf7bc764e3eff2434a3d52035 *man/dot-compare_packages.Rd
72372d7fc7a7b0df2dd498af51e90e45 *man/dot-compare_registries.Rd
4eda4d26673b321386219ee1ec5a1566 *man/dot-create_config.Rd
7d17479242d87e71180525bd037df6e0 *man/dot-create_example_script.Rd
c1b272256de5b40118fd313b4faff9a6 *man/dot-create_gitignore.Rd
56e74326abb8ba9cb17b0499a3e9b286 *man/dot-extract_package_info.Rd
2e63f48ebd024d7f949e90b882cdc0e6 *man/dot-format_r_value.Rd
32ba09f622c06874c6ad67fc58b0f127 *man/dot-format_size.Rd
02a4be37c4357e023d6767727961897e *man/dot-generate_comparison_report.Rd
760488bb48470a22cf2b311d316448c2 *man/dot-generate_docker_compose.Rd
42c89ae70d925d6185d2697e79bdaee5 *man/dot-generate_docker_readme.Rd
7324ac25bd685f5ff317899dcf753906 *man/dot-generate_dockerfile.Rd
11f4a6884324fa08cdd527d9187929ce *man/dot-generate_dockerignore.Rd
bff5414330849e231a09078e2d018132 *man/dot-get_fasta_stats.Rd
3d4651e333763bce35ee01492fb180fe *man/dot-get_tool_path.Rd
9f737f27a0fd329d9849e02f60ea3932 *man/dot-get_tool_version.Rd
990cc065d6652759769d09503974e522 *man/dot-load_conda_registry.Rd
3adc536e6d5661e7fb78da15aedd191e *man/dot-load_param_registry.Rd
4edbadc9bd1ca8aa5590c9cbaf719a1e *man/dot-load_reference_registry.Rd
871ea1a151c53ebc9a4614cf27ca814b *man/dot-load_registry.Rd
5262372388205407defc45652e0d7de8 *man/dot-load_seed_registry.Rd
a52fd21d26f58723f78a8a22f3d47722 *man/dot-load_tools_registry.Rd
f2d207be6bd680e69446e2b13d3778b0 *man/dot-parse_deps.Rd
8923b4dbec73f91dafeee98bbd401ccb *man/dot-save_conda_registry.Rd
1db3696e2a8848bfe7ac6677dd73ae7f *man/dot-save_param_registry.Rd
2926d3e561674454fa2c1a56b720ec55 *man/dot-save_reference_registry.Rd
339a830a75834971357c5b34ec475aee *man/dot-save_registry.Rd
14a064e8793e7d1d8ad8ffbfd4576290 *man/dot-save_seed_registry.Rd
d888c9066830cfed1090483d554c5a12 *man/dot-save_tools_registry.Rd
d382db5b7f64eda9b43f26fc599a2722 *man/export_for_cwl.Rd
2ef5b24217ac5f46fd712619d74fefb9 *man/export_for_nextflow.Rd
c05434a51c969f17a562c57c45bc500f *man/export_for_snakemake.Rd
60cbc162ac18016580830045a2662d73 *man/export_for_wdl.Rd
9e9b2b35206d7625c28d64a507412fa4 *man/generate_docker.Rd
2f7aa817408f588a2990ea6d2e3bbeff *man/generate_repro_script.Rd
08eadf5b546183587089d838b3c6c333 *man/generate_singularity.Rd
197e485631e41c949e4c93a4a53b0ba8 *man/get_conda_env_info.Rd
147acd5c464cbdfc0254f03b12c35a92 *man/get_data_lineage.Rd
b4d0d23b7dcebfc9d41e274db5f8a0ff *man/get_param_history.Rd
3df83a815b0fa3aef0794762722aa40d *man/get_reference_info.Rd
aba70ad6fde092172907c3642f9a95d5 *man/get_seed_history.Rd
39f208e921d8bcbe9250836aec9753c5 *man/get_tool_versions.Rd
2747147db5850a948ca9293365aa420d *man/init_capsule.Rd
95d77dd2afec6dbe8ff0550495dbca6e *man/list_reference_sources.Rd
f508f5c832ff189c26fcd53668e0a3d8 *man/list_snapshots.Rd
bfa63a32c43ada66d867d5fd6fb7fb1a *man/restore_conda_env.Rd
ec758b6b626a5f209ab81e43a45ef8c4 *man/restore_seed.Rd
a5f6a144276c944df8c6a45f20117499 *man/set_seed.Rd
ca344b9fe08eef11af1f124a9013c2d9 *man/snapshot_packages.Rd
59a1b368eec33a685eece32f2ba5f18d *man/snapshot_workflow.Rd
c0da475e4b8cc620cc8ad0a405164446 *man/track_conda_env.Rd
4bde3f42a645ea552142b5fae2b80f3b *man/track_data.Rd
b9a74119de243247465c954b56ce192a *man/track_external_tools.Rd
5bb7d69caeb1f4ae114b559f08ef6574 *man/track_params.Rd
3471d7323c6f5865d6406d5ae5783f01 *man/track_reference_genome.Rd
f2f33259b9e2c0d0a27fa3be47a212e5 *man/verify_data.Rd
97d6d21cd106afea2ad4b6845942dfb0 *tests/testthat.R
721bd59a2b0e6ba23ca7378249ecd9be *tests/testthat/test-basic.R
6f970a5bf4a1bcf4deb1780568b72515 *tests/testthat/test-conda-support.R
81771b52c4a95513220f8a708b60be87 *tests/testthat/test-external-tools.R
813db341da438448516f2dc5bd53be11 *tests/testthat/test-init.R
6ef3d7ef48e368f6e672a72842923b97 *tests/testthat/test-large-files.R
ff45b54ec9fea4c7aea9fb7cb6a1206d *tests/testthat/test-pipeline-integration.R
c60d7c91120a33c94534a444e10fc24f *tests/testthat/test-reference-tracking.R
6f56d635ff520cd3f607d11a66fc7781 *tests/testthat/test-singularity.R
e781c1d699ab5bb4a37ac7c906c4b357 *tests/testthat/test-snapshot-comparison.R
51d29a8d106a91e3302a9f5e98a26444 *tests/testthat/test-snapshot.R
6015a52189054cccd667875ce71f7ea2 *tests/testthat/test-system-hardware.R
