d9d5298f9e82c80422f2dc9323a0153d *DESCRIPTION
b7953d26f61f5ddfcde5417f8b154649 *LICENSE
708ab8a83aa5468c59341851e710039b *NAMESPACE
cbb0edcd376835b15ae45ac3483c353c *NEWS.md
91304fec29d162976005c9914808c625 *R/IO.r
9deb0c6b5506b33911f88bec40299b9e *R/coverage_plot.r
16bc4d5066dbf53ef6790c88b658cf9a *R/dotplot.R
88ef05cdcc560fb640d02084c6be105c *R/filter_ali.r
ec6ace6fa52981f39ac7f59921617513 *R/scale.r
159a509f8d2f52a9f9afe6f5346cb698 *R/synteny.r
a5114755764961cf556c1439f728ef3b *README.md
77496f7afff1e41153d785714457a350 *build/vignette.rds
27a6564bb8ec17e9eb9cf293a820de0d *inst/doc/Introduction_to_pafr.R
cbe1a28132a69dabbd9fe8f8f8acceb7 *inst/doc/Introduction_to_pafr.Rmd
d7dc55d4d6c7f9b67ed961f7b7749a6d *inst/doc/Introduction_to_pafr.html
4948f43ad511af9baa4eb1fb128d0ded *inst/extdata/Q_centro.bed
ff1b29b369833bb0fa36d40b3e18520f *inst/extdata/fungi.paf
f0f87f5d58ee2f8a4084193b90786f0e *man/Gb_lab.Rd
6884ea23a0f225d8e245a539c608f148 *man/as_paf.Rd
6bcebe630a8c1c8fc2f58708185e2f48 *man/chrom_sizes.Rd
d2732e6c294b6b5ef05640a82aac8689 *man/dotplot.Rd
7b7ae5662e27001cadf161dbb0636d45 *man/figures/README-coverage-1.png
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a358c89997f6eb176ad38f4059a7b45c *man/figures/README-len_distr-1.png
1b6c97bec734129b86c9c704186540ea *man/figures/README-synteny-1.png
41ae694e56a1fa3b65a65ad5bd6c64d3 *man/filter_secondary_alignments.Rd
f0566ff34dcfd9276075c7a92c6eb165 *man/highlight_dotplot.Rd
88fe030180cf800aad1cec1a5953f197 *man/plot_coverage.Rd
bc8841852403a3a5671d3276f86fb55f *man/plot_synteny.Rd
0cf7e0b4b643fa9c5830ada71cd710a3 *man/read_bed.Rd
cb4d1db433bb9757bd98a9d15c235620 *man/read_paf.Rd
ee053d3ca245476b76ccedbbdee57df5 *man/theme_coverage_plot.Rd
e13835bf1f03daff0a79e1ef08e9b3da *tests/testthat.R
fd57723924edc64aabf74daa025ca32c *tests/testthat/all_inverted.paf
76ff4598b08238274b2885aec37f34da *tests/testthat/bad_I.bed
1a27ea16c7e7c6166491bc88e2e2dc4d *tests/testthat/helper_load_ali.r
92e916240857851837e4f956ccaf1606 *tests/testthat/tagless.paf
2f255ccaf52839b26e0e85bf18f04ef3 *tests/testthat/test_I.bed
354cc61c04166fdf7a6de83283eabfa7 *tests/testthat/test_IO.r
e1f4fdfc187ff364e3a9af41cf469596 *tests/testthat/test_T.bed
12d4224c62cb52a61de1a140eb602efd *tests/testthat/test_ali.paf
ef299907656444fc3cf7e66c41aa10d0 *tests/testthat/test_bed.r
8a887e33f760ecebe38729f2255bccd8 *tests/testthat/test_cov_plot.r
ce076d209096da93c6c8a46562d18c0a *tests/testthat/test_manipulation.r
9a435a3903d95439a4f5098ba9dde37d *tests/testthat/test_plot.r
4b8a24f3663fde1b8b84c818f10eb41f *tests/testthat/test_syn_plot.r
cbe1a28132a69dabbd9fe8f8f8acceb7 *vignettes/Introduction_to_pafr.Rmd
