8523711fb8d6ef822c348a10ddddbf02 *DESCRIPTION
f0ccc151ed5f5066c4296156dff2f3e9 *NAMESPACE
b1db9fb187763a41b8999a238dbf66ac *NEWS
3eaafe4f18e15bd2b3e733d0c99a5c72 *R/AIC_momentuHMM.R
cee496dfc9b1780c9eea196685225730 *R/AICweights.R
b36ec049617f120f660338db422ba6e3 *R/CIbeta.R
d03e0facebf7755a06929477b034f934 *R/CIreal.R
28f72204d67b88ca92e33d8342ffba78 *R/HMMfits.R
1c1689b175f7776da3b36cd90a143353 *R/MIfitHMM.R
48ec47fc24543c6bf500eff7ef42676d *R/MIpool.R
8f1e0006878661a5cec74a6bda638d4d *R/RcppExports.R
f92dd31886bfc3d5d465de025cda0c97 *R/allProbs.R
0e3f8472e030bc58ff90e38da9d6ecf1 *R/checkInputs.R
88732b67f285e97f154535b143ad2f82 *R/checkPar0.R
dd5e116be9ff408185baa2a72328a9d1 *R/circAngles.R
39ad735719ad44b8f7f1115c95830270 *R/crawlMerge.R
0141c46ff2b445b9ee7bc289dc7fb07f *R/crawlWrap.R
d0fde0601947308d2705960803cf54dc *R/crwData.R
4422c3310fb574c0430efde13c6218be *R/crwHierData.R
0b8b98326b5f7ad3efee6655520c7951 *R/crwHierSim.R
5a698331ceadd4faea578b08824eea12 *R/crwSim.R
e7efd3eebd61bfe5fb0bea711d53f18c *R/distAngle.R
574feff188581fc395a65bb95ad2f7df *R/exampleData.R
41b0f7e129bbe2fa7c7af18c0a83e09e *R/expandPar.R
17d0ef381202708c9356f775a804bde0 *R/fitHMM.R
b9f55e5c195292ee275797d4e0208601 *R/formatHierFormula.R
cf2c479cce1d9906707fe62114be810e *R/formatHierHMM.R
9f4865ab77e92e8f73a7daffc223ae56 *R/formatRecharge.R
c8d507d8af05ead0f569111899d0807b *R/formatmiSum.R
d087eb49a6b9e777abf1e97eeefece34 *R/getCovNames.R
54fbac4f1a6e25f825c894dd9e1f0e2d *R/getDM.R
0722f2cc5c9ade278507715e3d13bedb *R/getPar.R
c82a4de72e1476d5e37329df2f39c50f *R/getPar0.R
77fb14c61131064d677be66a830e1c5e *R/getParDM.R
45d89c8bb368cd8b074221fc3290bd93 *R/getSplineDM.R
173ac9b4e53aa2f62f15a97f87cfcbb3 *R/getTrProbs.R
f5fb278ffc1f27b3fbedb3597e861a08 *R/getWorkBounds.R
1058d9873e30790f4ce606497a15cef2 *R/getXB.R
b708d0a9f5be9959d4ec37c2f1060f04 *R/get_fixParIndex.R
ac4671535d40f4bf68df6e9998fafee6 *R/get_inflation.R
aae74cbee7fa124db4e7e74166b799ab *R/get_ncmean.R
030071042cba7c8c5e74048a6428cc77 *R/get_retrySD.R
e0b51be9a73a60b3a5db0a2c0710d82c *R/getboundInd.R
faa05ff80e026973b73a59461a981f15 *R/is_formula.R
de4a0df3f7fdd676daa026ba9fe95e8c *R/logAlpha.R
e8ffb2d868f553693d594b6f975b286e *R/logBeta.R
eebe8b3ae6edb392fc61233e8394e28f *R/miHMM.R
af7788b9b41992fa95bea1e5ab2b09a1 *R/miSum.R
a42422f39a4eccab2e81ac7c703e4c0d *R/mixtureProbs.R
c1d5cdeeea4aa7d5ae044184f58ae6e5 *R/momentuHMM.R
775930039920b42f9c5f31b5f58c4292 *R/momentuHMMData.R
63cb494579d7fac003fa5fa0bcf85cb5 *R/momentuHMM_utils.R
a60ed2a97a52674285b4e49af5ba1e67 *R/momentuHierHMM.R
b3fbe60e65c9a720e759a3501dfc2e2c *R/momentuHierHMMData.R
67765aec21fa1da2ae859ce694baa076 *R/moveData.R
e0efa1dd71fd99eca7b1c8d76bd45888 *R/moveHMMwrap.R
750f88fa1a1f94d86374132555fa2640 *R/n2w.R
f12adc797a932eeff0aa7377edabc1c1 *R/nLogLike.R
1947041edd07f6309408971a4486cb0c *R/parDef.R
b7496cc230fe8d6fb9737677cc6e67ca *R/plotPR.R
9a6da36e64534f26ad1c904b4867a134 *R/plotSat.R
b180beab3e44248f5c70bf24fb25d552 *R/plotSpatialCov.R
1699ab0c717179674950db4fa5089a45 *R/plotStates.R
28bfd95a11362277c79646e7b7657917 *R/plotStationary.R
7624565e503fb4ecf010b93fe03f0a8f *R/plot_crwData.R
cd6c0b29064164df623deeb4261396bd *R/plot_miHMM.R
953d7917614ab9ed61f39801d9ea293c *R/plot_miSum.R
dd44bc4a30b1ad1dc6a3f1cf0bf8b410 *R/plot_momentuHMM.R
2410e35e9beb1e35a1c5b1d7e5f0a103 *R/plot_momentuHMMData.R
4dd389a0ad1a57627dea3958c5354f79 *R/prepData.R
950bb0827f2bde5ea67f4311f780667e *R/printMessage.R
a57d55c3ee2dd5dfbaceeed77f18b98d *R/print_miHMM.R
b71abb0b11593eb59b6be746237fab77 *R/print_miSum.R
776002699799d19173dd5ba5770d1963 *R/print_momentuHMM.R
49bc31e2352eb306bf67ec071771f178 *R/pseudoRes.R
4d82b544a385a95d00584f677d347d13 *R/randomEffects.R
7e4afbebe3ef42a5a8d5eefd32387467 *R/rwrpcauchy.R
a113d790afcdc2d778f4cd30084d3f9c *R/setModelName.R
427b7f2d8cebafedf4c52420e679c89c *R/setStateNames.R
1d0f7db33cb65a810a440badc28b0c23 *R/simData.R
daa43427be4d0655d95a6d3db3badd6d *R/simHierData.R
5d2610d51bfbd4efa865d91cfb6ca78e *R/simObsData.R
9b4d98299339392eedcc8b735de6673f *R/stateFormulas.R
c1d927411a55007f5f4792fcd0a56382 *R/stateProbs.R
184c665e0b602121d9d4a8c436218e78 *R/stationary.R
48346ddccaa8c8e761b15fe4dbc00e22 *R/summary_momentuHMMData.R
9d69ddcb409ce39a41cb051a4bd03bd3 *R/timeInStates.R
7b97e4e85153f2be9e049cb2789645cf *R/turnAngle.R
4cdc31d2c7a2f5cbf4f120fdd84bc5c6 *R/viterbi.R
60bf90bbf1d37f5a747122dfc87e8fbe *R/w2n.R
7e91497e419e7cf283cf93dbf0537475 *README.md
0c6ad5b3446721162c89589e8077ab1c *build/partial.rdb
9cb0042fa37e6a1186cc9e6ce9b01bab *build/vignette.rds
9d82c8c0e8e2681c04ff444cabcb0c68 *data/example.rda
c6ee6ba98f69cfd1f917f8f0a99791ff *data/forest.rda
68e1811cea7011bee277d52920d281c0 *data/miExample.rda
cc2ab733f72968df6da42bea70151e14 *inst/CITATION
dc083cc70b135dc294a49daf3113e7a5 *inst/doc/momentuHMM.pdf
3a3964f218a6279b45722646cbc3d1ea *inst/doc/momentuHMM.pdf.asis
5962039b23ef65655cbedda4a986351e *man/AIC.momentuHMM.Rd
ffd2f080bfc196b9db5daf4f7e5ba3cd *man/AICweights.Rd
44bf8518451bd535f71b885ed70d351c *man/CIbeta.Rd
167d9efa5f75b80e99a5b5fb56e9aac7 *man/CIreal.Rd
d291cd606b79396b656a662585580092 *man/HMMfits.Rd
2746652c3220455375924c8e9edb0b80 *man/MIfitHMM.Rd
f1d3c31c12febf69e7174bba4aefb6d0 *man/MIpool.Rd
d4b83196982d76c8f9aed75a12365822 *man/XBloop_rcpp.Rd
3ab767f6d0605212b9740e2a0a6e4198 *man/allProbs.Rd
09a90c190a89a99cc52f65caaf568d6d *man/checkPar0.Rd
6e32f6d5350e2b0ceab9d6de60c806a8 *man/circAngles.Rd
b75bd451442914259d489ffe48165c13 *man/crawlMerge.Rd
14064e4efa55dbdb2b1fa926456889bb *man/crawlWrap.Rd
d88134344d8e5940f1bda0ddf76503a0 *man/crwData.Rd
0737cc7ac7a95f1949f9936b934f15f9 *man/crwHierData.Rd
bd8db9d5e11b22679549000cc8c92867 *man/crwHierSim.Rd
7c4f0364b276f37ca5469c7c6c7e5a12 *man/crwSim.Rd
e535053ebd10b6688fc9b43db4fd03f6 *man/dbern_rcpp.Rd
5441f92d4a0edf89fe246e611ae20d2a *man/dbeta_rcpp.Rd
deea42c16a04ed9ac0caef750ec293b4 *man/dcat_rcpp.Rd
953a2c8322835daf83aa938ce45b9aca *man/dexp_rcpp.Rd
71b84c528e1770689c60b5ea9aec947b *man/dgamma_rcpp.Rd
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d941188f0a5fa30c719a5ae93fa1318f *man/dlnorm_rcpp.Rd
1b326d7b679b22251da7c9116bbbfe47 *man/dlogis_rcpp.Rd
ed861141fe130e126bc2848ce8423c51 *man/dmvnorm_rcpp.Rd
a9720ab3a41621a512df73f29019e33c *man/dnbinom_rcpp.Rd
aa18dff0eb871621b5f2febdf59dd27b *man/dnorm_rcpp.Rd
faddd36043704acbae96a6ab880addb9 *man/dpois_rcpp.Rd
6f66a1b2a39b57b2c5b0fde19ff3c6f7 *man/dt_rcpp.Rd
c331d29d31c63bd1362d0a6e347848f5 *man/dvm_rcpp.Rd
c8420c448a9d8ad8c2fe5f5ea309de93 *man/dweibull_rcpp.Rd
66551b21df0122b11cbe482c094c8b62 *man/dwrpcauchy_rcpp.Rd
3046b78ff81c2de53b440297b163f762 *man/exampleData.Rd
dbdf5f7f4d0dbbce444700626792acbe *man/expandPar.Rd
8f890efcae8be702d1711b454752f971 *man/fitHMM.Rd
8e3f3041a7a1631f3697375cd681b143 *man/formatHierHMM.Rd
df7ef0066b8a197871aa692b10487159 *man/getCovNames.Rd
cacdfb8ec83709a43c0fcfe1df8288ab *man/getDM_rcpp.Rd
5dd6595b2b47705da596e850cc4ec01e *man/getPar.Rd
67559e4a2abcbe84905c75bba0ffbb24 *man/getPar0.Rd
ea242264fd2840c6c9e8ac30df2fa8aa *man/getParDM.Rd
e491fc1c62a2cd7219b4dd2597ed80d3 *man/getTrProbs.Rd
6375fc4db9a7c07d05fa4f7613dca4de *man/is.HMMfits.Rd
769f8269e0796d1b55b410a736004467 *man/is.crwData.Rd
e43492d53fa25767d98505b6a276c068 *man/is.crwHierData.Rd
ed34a9300ec7ae300ecc2b1974e548e0 *man/is.crwHierSim.Rd
295ab23d1cf4ec04454bb7ed4c956754 *man/is.crwSim.Rd
cfd70d5888ef05ce290bceb03d78b745 *man/is.miHMM.Rd
f16b45b1684dae4f2583f222a4bd1580 *man/is.miSum.Rd
f1c5651d7cbc38ad74adea650fd4d50d *man/is.momentuHMM.Rd
4425b3ad0d541ac7b994646b80866c7f *man/is.momentuHMMData.Rd
9d4e97862e29e2cc2b2be7e39f964f5c *man/is.momentuHierHMM.Rd
1b96398140e2064476de9a2d6d56d12c *man/is.momentuHierHMMData.Rd
63bb4ded4473223776adbba23e6bc506 *man/logAlpha.Rd
4fec03e00f48213011bd666e132ee856 *man/logBeta.Rd
1b6981f572cf4e63b831c487dd960d79 *man/miHMM.Rd
6b453dc727b22323858a9a5c3c8e6cf3 *man/miSum.Rd
8ea3595126bc61811ce0f1661e88f98d *man/mixtureProbs.Rd
0c3b52a2e7fbd8ffa53154606f301eb3 *man/momentuHMM.Rd
5bc98273d05ea49b6e4ccd09e89a0e51 *man/momentuHMMData.Rd
4acffdc3950a575158caa03d81ea86e4 *man/momentuHierHMM.Rd
8079e8d10f5e5aaffeeec117b9ca22a3 *man/momentuHierHMMData.Rd
c59e5bc458daa41aeb1bc00b8470b7b1 *man/n2w.Rd
c0f1b887e7bafc01aeea87d1839e3a01 *man/nLogLike.Rd
804784fabbd4905842751568d0400120 *man/nLogLike_rcpp.Rd
c06ce14c03b070a5e0a521e74df110d8 *man/parDef.Rd
9a52bd80ef22a3338c4740b07b80bec8 *man/plot.crwData.Rd
6a19024ce8ee302f4cddb6164643d149 *man/plot.miHMM.Rd
5d04f3bfdd06394fca521f66510329ba *man/plot.miSum.Rd
a8cab610edd9a2139330b43a0402ebc9 *man/plot.momentuHMM.Rd
2362e2f8a87074ef81b76de7ccd5a3ba *man/plot.momentuHMMData.Rd
12c62d0878ec42640b3e23d3352b34b1 *man/plotPR.Rd
a509952a0aca91b7cac3e927a474e760 *man/plotSat.Rd
ec98fb7eecd0c15ea3d1e8f25b44536c *man/plotSpatialCov.Rd
17aaa0e42253d52bff1770d27221f193 *man/plotStates.Rd
4e6f966f6eeb5b02064ea076202b5a46 *man/plotStationary.Rd
97b54f95ef16f2f2bd3a4c4561e2b2c3 *man/prepData.Rd
46c4b36c17b7e2eb7620781f05a76316 *man/print.miHMM.Rd
7c6dbc4a055268c07441c0a7c0f4530b *man/print.miSum.Rd
c2782db85eb43caebad85483eb7b3b56 *man/print.momentuHMM.Rd
2fdd8f559f8eab5e65355e5eef8152ee *man/pseudoRes.Rd
5a45766317d9575dc57242239396a6b9 *man/randomEffects.Rd
9eb60ec8b638fd09af4d68860380aecd *man/setModelName.Rd
58d422e2022e310b3371a8fa258798dd *man/setStateNames.Rd
67c2efab9e5fbac813192a24176305a9 *man/simData.Rd
5d9404fe72809e07932019fe1e6eb5a1 *man/simObsData.Rd
1621e4a4808c463cf05fdf9a23e79e37 *man/stateProbs.Rd
cd85724c99c99d1bebae95672c19c3f1 *man/stationary.Rd
bcfdf67c70c2957e1c42cd94ff8f83ec *man/summary.momentuHMMData.Rd
eb83f0266e6ff5c74eb0a1bc0a42964c *man/timeInStates.Rd
ee3358fb8723d77fc500327c49f70672 *man/trMatrix_rcpp.Rd
bc3744d0ee1181876eac0a61ca07cf17 *man/turnAngle.Rd
1eee14623875d1a06b3ea02dd6c2f938 *man/viterbi.Rd
2419412f954dec38b34acf154c119344 *man/w2n.Rd
8e6e6637c2eecd8e072911d063d4e108 *src/Makevars
e425c11a204c3ba208dcc578b1215880 *src/RcppExports.cpp
d3951a1efec5f3d7ffa4e7716d9edf26 *src/XBloop.cpp
0feac1d041e09c185f9f7636fdfa8dbb *src/combine.h
90393af83741fffd8a228e1b13e95e69 *src/densities.h
102ded2f5899b97ee6fc3d9eaed31205 *src/getDM.cpp
99cb2eb726504aa251f98783db1f6a92 *src/momentuHMM_init.c
84f33b9490659d8470d1389566493290 *src/nLogLike.cpp
b99907d8a0d34a193542a13b518f80f3 *src/trMatrix.cpp
77157fe74d1af34ac2c39d27ad4539b1 *vignettes/examples/buffaloExample.R
b45f8ead2230f937333b7a2567cebd4f *vignettes/examples/codExample.R
2a0744f9022ae376765b4b4cc100e463 *vignettes/examples/elephantExample.R
d5f52e66698500486511668313276e99 *vignettes/examples/garterSnakeExample.R
038722cc990ee018be090963fcb3e66b *vignettes/examples/greySealExample.R
b6ef9c8f473a7567979d7dba19f11ddf *vignettes/examples/groupExample.R
02e11afaeba2a898125fb937dc007117 *vignettes/examples/harborPorpoiseExample.R
4f086e0ad7cdf3c3c83e7181a9b2c1da *vignettes/examples/harbourSealExample.R
c905402a0804ac2d0b5b18f7ffffbb16 *vignettes/examples/hornSharkExample.R
93212113d2a2454ee30abc3bcef5c55f *vignettes/examples/landConstraintExample.R
82e82cc67fafc679c7e447739336df1c *vignettes/examples/nfsExample.R
74cf8e0b5439b36c5f20204637ead11d *vignettes/examples/northernFulmarExample.R
36bcffeb82fd514e2382f4d091388485 *vignettes/examples/pilotWhaleExample.R
f3264158b0d1ecb42ee017cb06afd13d *vignettes/examples/sesExample.R
a68c257bb44084aab74b7def1584c8a4 *vignettes/examples/turtleExample.R
c44604365031a15eb5ff3b640b829e7c *vignettes/examples/turtleExample_rw_mvnorm2.R
3a3964f218a6279b45722646cbc3d1ea *vignettes/momentuHMM.pdf.asis
