42c4b2a9759c799bad1f561d0bb1ab2e *DESCRIPTION
6ad135a5f7fbdabd0e3feda21330b703 *NAMESPACE
3f2eb9e3f6e965fa33a5f7febfb6f89d *NEWS.md
4b04c4476ec2e2700882e8a43e0261b1 *R/AAcompare.R
0165c5ac24a41230700c68cb859b540f *R/filtfast.R
86e47ed43b8c11ccabed2b8ae8504ceb *R/gapremove.R
dc6f36c45c6dc738aef0f73c58befe1c *R/longreadvqs-package.R
427f2cf8032636fcf72a2c5a57a0f85c *R/otucompare.R
097b0833924bea3f755eb829063d9426 *R/pctopt.R
14db605d2ac0f0c17761a127feb1aa16 *R/snvcompare.R
b56ff2b193ecba52f9ec7f3b10cca008 *R/utils-pipe.R
4e17090420f5da656f53c15899ac812a *R/vqsassess.R
9e0761f66d10305ede956b8723711b20 *R/vqscompare.R
16c9cf6f41fb66fc958a5f70f05b3226 *R/vqscustompct.R
31b38f69a118f010b806a557829dd00b *R/vqsout.R
31e0d86f52d31771d4860eef01a93e5f *R/vqsresub.R
3eafc073eda9c21a14686fe218526c08 *R/vqssub.R
72066a940de7f6aabd46532e1f607fd0 *README.md
7080893e02c49cd296d4424b9be55069 *build/partial.rdb
a5fed15e7abc0c2e34ad3aa27a85e5cd *build/vignette.rds
03b9d6901e9133c31af1d9878f5c64e4 *inst/doc/longreadvqs-vignette.R
4b72a7fd2cfe01f117f6aefa6fdda00c *inst/doc/longreadvqs-vignette.Rmd
4a0378ebd35e4668cd906ec474901001 *inst/doc/longreadvqs-vignette.html
76f5c633c34bab7bc028babdcff058fd *inst/extdata/bad3'end.fasta
d4a93cb88de61f1f0f84c3445b32dee7 *inst/extdata/badend.fasta
0e5dce994c38052d9c3ee3ef51a7d521 *inst/extdata/dissimfast.fasta
7355c1d9db9e5314db9838efeb59d4ef *inst/extdata/gaprichfast.fasta
ac28cdb081d8618ed1818cdd8c06e8df *inst/extdata/m.fasta
0d732105c066255ccdb94d6c302cb9d0 *inst/extdata/mock.fasta
ca0a7c60bbdc423230f6bcf513dc2b06 *inst/extdata/s1.fasta
ec883f25d6ecf623369c69b733dc28ed *inst/extdata/s2.fasta
1e5c6fcea3e749bc3a70388e692227c9 *inst/extdata/s3.fasta
38c210f2e9e11f7b70aa1b8477cd56cd *inst/extdata/s4.fasta
0102b0103d006440eef87d37610d8252 *inst/extdata/sample1.fasta
7e5a45f5e518a4a87a13aef51ea746e4 *inst/extdata/sample2.fasta
105b45f3641e5c37bca3f04d7704dd0a *inst/extdata/sample3.fasta
245b614598023d66508b75360e1e9f2d *inst/extdata/sample4.fasta
9656630e9c7c358e68271867191d4b9b *inst/figures/imgfile.png
efabdde886b4c79c1394fc68085577e9 *man/AAcompare.Rd
74b64b360eac09aadd6aec4a6c228e92 *man/figures/fig0-1.png
8de2ba30de2036685948a402cec42d13 *man/figures/fig1-1.png
b393c39c1f4fdb236ce5a98d73af637c *man/figures/fig2-1.png
08b3e4c5de1cfd0f79813fafd51fdd07 *man/figures/fig3-1.png
0b47a406e3286fc5f69f3a98d10f1a4e *man/figures/fig4-1.png
75f408564d0961683411dc0aafa16d69 *man/figures/fig5-1.png
ab79d74bf39e61090726f40858852236 *man/figures/longreadvqslogo.png
7a21e741e688934242db43a802acc360 *man/filtfast.Rd
c8b0dbc88397108fdb7e6502d88b5069 *man/gapremove.Rd
0caac4b8cae5cd961622da5739552115 *man/longreadvqs-package.Rd
6a30c9b92ceb7a87b0bd46de0cad3c7b *man/otucompare.Rd
9bf7b01ee4a97a73918fd98b206891d9 *man/pctopt.Rd
8f4aad003a999fae004ba9361f9a99d6 *man/pipe.Rd
54361a975b0967ad3032002f85a520b7 *man/snvcompare.Rd
9e845661c9705e7641ece5747ef929ef *man/vqsassess.Rd
f5d662de3761a52acfb179d507d7dc5f *man/vqscompare.Rd
47a28f89e5a7223d5e26fec0e11711d2 *man/vqscustompct.Rd
51a78718bee96cae043e49c4558fd5be *man/vqsout.Rd
feda01bfb1cea052607c9d8f6937ce5b *man/vqsresub.Rd
4f5db616497d52525af160463e15c33d *man/vqssub.Rd
4b72a7fd2cfe01f117f6aefa6fdda00c *vignettes/longreadvqs-vignette.Rmd
