a64aec531cd4a0d4b864f3500acd440c *DESCRIPTION
898d0326f7fdebeae755e4bc279cf1b8 *NAMESPACE
9407cc634bfa0cb0a7871a3d003f48f9 *R/BaseAverageQualityPlot.R
d8a17f4ef0e67e7bbd7dd70841b88ca6 *R/BaseAverageQualityPlotly.R
a89b3cc53052970456c1519432d2c75b *R/BaseCompositionAreaChartPlot.R
17eb54a6a8cfb4a767d6d10080d6afbe *R/BaseCompositionLinePlot.R
f5556d60865da7793e5d028e8a01182b *R/BaseQualityBoxplotPlot.R
6d151b12bb1915ccd7f5a0456ce90e87 *R/BulkAlignment.R
3d16480c37582b6a00c621b4d6c90b39 *R/CombinedAlignment.R
673cf36de685e8557af1484800bd16ca *R/CorrPlotHeatmap.R
a4795b83c96e9fc7718fe51cb2c5a24c *R/CorrPlotHeatmaply.R
bd6135a083b63ce4a1dde8cddf81038f *R/DEGsServerLogic.R
d56977d85961eaef90ee44a18e562c25 *R/DEGsUserInterface.R
d0342ed53d745b61e9cdc973a6976164 *R/EDAServerLogic.R
b1ecd25010c0502f0414602e9aa8c08e *R/EDAUserInterface.R
e7442c4b65f247837d83b866cc658dac *R/EdgerDEG.R
3be3b1e363af54ba4cbe3c8b7f3842dd *R/Filtering.R
f7bb0351f6f2cf413a4dbec8634e0f22 *R/FilteringServerLogic.R
58c40b50c5e3a1eeda5ff4783ecea1a0 *R/FilteringUserInterface.R
7fe884c44e82d44f4d0f6a57d4ab9e73 *R/GCcontentDistributionPlot.R
25eea04860e1319bfbc5521aa98611fa *R/GCcontentDistributionPlotly.R
387d40d9573f4cea97e7b2f06854c621 *R/GetEdgerY.R
7a4e76104dcc8802aaf23c00b49bb50d *R/HeatmapExp.R
6480469de21895320b803b27e36171b1 *R/HeatmapExpPlotly.R
298205a449a357c262f4dfd04c5fcc42 *R/IndexingBulk.R
23e15286439467ee1d8de12244b89c95 *R/IndexingBulkServerLogic.R
b9bc5aebc0a03c17ef4622cd60221762 *R/IndexingBulkUserInterface.R
5b1adf17148e8e0a6dc07b08842a7366 *R/IndexingComb.R
9772d01c03d11e59fdb1251529004fc1 *R/IndexingCombinedServerLogic.R
c1849d7b60a84a0f1c7afe8faf3f621f *R/IndexingCombinedUserInterface.R
b0c6b6a018253529ced737a1dc6ea2e2 *R/IndexingSequentialParallel.R
8dc5d917b9796fb4b2213286bdf72beb *R/IndexingSequentialProgressive.R
b4c70ef4e169c4c30a3d87c3b7fb58cd *R/IndexingSequentialServerLogic.R
20a3ce8caa8ff1fe2f3777f00a7699f9 *R/IndexingSequentialUserInterface.R
15170f03a7787650b0070046650e836f *R/QualityCheckAnalysis.R
55f599d61f53c71880d4d4e30177b3cd *R/Saturation.R
e003db235b78f9f6e81f37c0466346af *R/SequenceLengthDistributionPlot.R
33d865f1d0a1ac40ea78c832a99d60c1 *R/SequenceLengthDistributionPlotly.R
9dfca63e3d2a9beb7297b0693ffe3caa *R/SequentialAlignment.R
f5304d38c82931cad4f7dd8340bab24b *R/Summarization.R
c2a025a6c3a2522b7f057fb471008a11 *R/SummarizationServerLogic.R
9564477b27d3daa2e99fe84b507b4a24 *R/SummarizationUserInterface.R
8de1fd1734bf37e417b7d8df1fd97093 *R/UpSetPlot.R
5e7457260fb5edeb619af30f78a42728 *R/UpsetjsPlot.R
5ebf97ae5c8348eebd47ed04e42d9900 *R/app.R
71ad16ef8ff651bb0e011193b84e2ffc *R/barplotExp.R
5acd88ed3cd3348c786b10c75af74ac5 *R/boxplotExp.R
54ffddda077e818338e1b7706081b611 *R/checkMetadata.R
24ac698fa9fcd356292283f0c7af5c4b *R/counting_Reads.R
725964368daf926d55b47bb646d06574 *R/getDegMerged.R
d7d9dd9acfd1e4d5fa080bed89177b09 *R/globals.R
563c7e8baa92c9453e46feb39cf52a12 *R/mappingBulkServerLogic.R
551ec9e3fe7fa2aaf297ebbe8afd91be *R/mappingBulkUserInterface.R
83c8b9919aed1f8d5ea461260866e3fb *R/mappingCombinedServerLogic.R
906f1fe964267ac7e41a44cacfdd5d7c *R/mappingCombinedUserInterface.R
828084aef83dd69016f125734697d09d *R/mappingSequentialServerLogic.R
80909eb101ad0a6996239d283f8bb823 *R/mappingSequentialUserInterface.R
597ded1de5a9cad660d45f01f3542f25 *R/mdsPlot.R
4df8ac39242979a8ebcda283fcdbeadd *R/mdsPlottly.R
b05028ff84d972c6632dd18d72753355 *R/mdsinfo.R
4db6f45577172196e61ca8ee5fc2c1ca *R/pcaPlot.R
bd1ca728b127a57bbeeaafcafe038c15 *R/pcaPlottly.R
dbb8acb753709e1f41dd2df44d8e4fcb *R/pcainfo.R
1968cb0083f4f522e62858ca31050fa7 *R/qualityControlServerLogic.R
c2473d7cfb35637f048e68dc7fb951f6 *R/qualityControlUserInterface.R
c6bc5ade56767bcc9176ca592ed28666 *R/volcanoPlot.R
181770881631a7558e69a2b1aadf6a2d *R/volcanoPlottly.R
e4beeb42e7573e4eb990b1e614d22c3e *R/workflowServerLogic.R
ec7cab9b772b1f04f277795291819b27 *R/workflowUserInterface.R
bb8c68cf1da2265e7b32538a757511d8 *R/zzz.R
6f74afc662bc6d901e516e7411cf8cfb *inst/www/BULKpipeline.svg
32abb610be07a36b4a60a1596ed76a82 *inst/www/DUALpipeline.svg
ef483753179d7f96f35866a89734d3c2 *inst/www/favicon-96x96.png
924c8bd27939a3045ca9ca377aef0601 *man/BaseAverageQualityPlot.Rd
7e3c968f298d30a77afcc394a61c58e1 *man/BaseAverageQualityPlotly.Rd
b9d20c37fa5c252019ba840d8d69e9c2 *man/BaseCompositionAreaChartPlot.Rd
f34e35b40c71c199e04958a8e5420930 *man/BaseCompositionLinePlot.Rd
ff2280c4edf57e04edda2cfb6f34ab08 *man/BaseQualityBoxplotPlot.Rd
235fbcfa90a2f5577a57db798a8e7a5f *man/BulkAlignment.Rd
f7645504e6d118ca5c38fc8b57585a3d *man/CombinedAlignment.Rd
a26193ac037294d4b0fa17d77ddbb54a *man/CorrPlotHeatmap.Rd
ce538735162f48686dbe02d12ef8aa6c *man/CorrPlotHeatmaply.Rd
f8011cd89eeb508ef28b50ef3376c40a *man/DEGsServerLogic.Rd
0745731e0b2cdad5dec5bcaeb0dd0d73 *man/DEGsUserInterface.Rd
eb20bda42935e4aaea3419e53b1abb77 *man/EDAServerLogic.Rd
e024d8800f7cdda4a11f064a83cd01f1 *man/EDAUserInterface.Rd
ce78661dc14427d3cc3a05659b7b8003 *man/EdgerDEG.Rd
e496e107e766a004513efde0a764aca0 *man/Filtering.Rd
9b6ca27435b83ab770c8f6b05593a3c1 *man/FilteringServerLogic.Rd
7dadff6b2b76d7f716c960566a0fddb5 *man/FilteringUserInterface.Rd
b1b89116a78cf187fb19f1e11c3a8858 *man/GCcontentDistributionPlot.Rd
1cbc444aeab20e0dc8c7aa1ca7206eda *man/GCcontentDistributionPlotly.Rd
05dd20125f28fe348d0b4794c67dbcc7 *man/GetEdgerY.Rd
aad2b786d3776573896d07dc91102aab *man/HeatmapExp.Rd
52e527863fe51d3be64ed8f1b9dc5d71 *man/HeatmapExpPlotly.Rd
75f8770d1513d8bd3434863da74e63a7 *man/IndexingBulk.Rd
6786a6f10cf572cb7ffb371765e002d9 *man/IndexingBulkServerLogic.Rd
d7e567a986a384a26ab685c97ef7554b *man/IndexingBulkUserInterface.Rd
c6de651bfb88c1d9a96b81590159a1ec *man/IndexingComb.Rd
e557a7eda462b1472449aac047bfbd23 *man/IndexingCombinedServerLogic.Rd
05c2954b4baa26b376335a0e09ca2eab *man/IndexingCombinedUserInterface.Rd
677858673fed7c5430669266e4a487c6 *man/IndexingSequentialParallel.Rd
e1f6a31472ec298e525e25db6c1a29f1 *man/IndexingSequentialProgressive.Rd
6c72462476d5725b201328e919ff4a61 *man/IndexingSequentialServerLogic.Rd
ff34feaae19e28bc752cb7813eb6561c *man/IndexingSequentialUserInterface.Rd
86ed94132d8882c02832a57cebbf4127 *man/QualityCheckAnalysis.Rd
31c67f0c050aad2e5b1a68ed1fc0a873 *man/Saturation.Rd
bce89e3d5df77c22552bd9cd52607f95 *man/SequenceLengthDistributionPlot.Rd
23be5a6fc5a8145e93fd2651579cc188 *man/SequenceLengthDistributionPlotly.Rd
fe4e90804ddc34643e02a99a605efc92 *man/SequentialAlignment.Rd
a8ca78cc4348dd8f55a0d4c7718cdb2a *man/Summarization.Rd
0bd1e4f2217a35a0beb2c5f3bb7c8dfe *man/SummarizationServerLogic.Rd
26a8a4402a39e3aeb31976dc1f940747 *man/SummarizationUserInterface.Rd
60ccad100fcf613663d0f948881c36ce *man/UpSetPlot.Rd
e2246952a359ae73bb46cffd1fe37327 *man/UpsetjsPlot.Rd
4e5d7d97f5ab0ab4493c58d2b72a6843 *man/WorkflowServerLogic.Rd
5685e3b0fc0a98a324779dd5a1049d31 *man/WorkflowUserInterface.Rd
73fbf55ca4985744bdd5dd8656164930 *man/barplotExp.Rd
0286780303785bb84eebd4f12737fb61 *man/boxplotExp.Rd
a94722979e086e849cfe3380f1b14051 *man/checkMetadata.Rd
946aea19100799abe8c359e0687f268a *man/counting_Reads.Rd
75724574cc8312b52ee00156b9bd3f02 *man/getDegMerged.Rd
d9937e5d6ad07a3b7a8c4a611786bf68 *man/inDAGO.Rd
d990757da8299a78cb14eb254d4bd789 *man/mappingBulkServerLogic.Rd
5d608c438a8fb0715ed03dec217dd5f6 *man/mappingBulkUserInterface.Rd
2448911063875a3f71e7d86486ed2ccf *man/mappingCombinedServerLogic.Rd
19c488b587fec6c2809ba1ae7d3cb254 *man/mappingCombinedUserInterface.Rd
0b2c73a0e9182a643455271f3f1d1422 *man/mappingSequentialServerLogic.Rd
3320fe91dbe0a4f57bc8a42916192a15 *man/mappingSequentialUserInterface.Rd
27e6dbde4912beb2a8972420647b3196 *man/mdsPlot.Rd
bcf78c9e46caec18d65d5dad237d9ad7 *man/mdsPlottly.Rd
8353a5352b7a1a2f59f80eeee7add0db *man/mdsinfo.Rd
388277f16d21b6876608b9b7f7d840bd *man/pcaPlot.Rd
19f2044d535dd05493aca70e4f4a2bc4 *man/pcaPlottly.Rd
7492ca0733b8ee5e94048e4227386810 *man/pcainfo.Rd
7c8b2c1b3269b128a6caf8875288ab03 *man/qualityControlServerLogic.Rd
7e2a3e48b7ebb04049cf56cb6cbc89d6 *man/qualityControlUserInterface.Rd
f56859d661cb883378bf2da118ac4ad6 *man/volcanoPlot.Rd
1765accca56659f3255e6025c71050fd *man/volcanoPlottly.Rd
25c10a5b6c5ec2ee0c541870f466a4d1 *tests/testthat.R
edc2cb644b396b6fa5b95d63b9741c44 *tests/testthat/test-inDAGO_shiny.R
