0367858931c0d38c004e06974ea51a77 *DESCRIPTION
0283c5d0a7b9b7d568505f5c593072b3 *NAMESPACE
47f59b75a5910f9c26bde1fb65c5eac4 *NEWS.md
8923d7ab871dd7d258a1d9249ac5ff2f *R/RcppExports.R
7f2f63d4f7ce2854657231df215638e7 *R/cophe_hyp_predict.R
7dec3997a2da4bac7e8ba671682b5993 *R/copheplots.R
1f0e1e7f63b575c988fd0a4c9a8f3055 *R/cophescan-package.R
e4bd9ba9209b8423261270fc2fd1ab3f *R/metrop_hier_priors.R
c1a6ce4a62edcd1c2b075cf89cf76c86 *R/multitrait.R
e128e5178f1e3aca96a6ad7e0d9270a2 *R/multivarsusie.R
e7a331f37017e1964c086ce60b7ae1de *R/singlevar.R
1b515a0468fc303044924c92ccb448d5 *R/testdata.R
d41d8cd98f00b204e9800998ecf8427e *R/zzz.R
41a68045cb2dbcc33f9143bd44183bb5 *README.md
48333071777305faafb4d1969be793f5 *build/vignette.rds
b629b782f59d7875b5db3a26764cac0d *data/cophe_multi_trait_data.rda
1715d557f33b60221cab51e6b151a318 *inst/CITATION
bbcb89e9513352f073dcbdc2545b1b1d *inst/doc/FixedPriors_03.R
ea520d4dd8d292584839ce49dae9d473 *inst/doc/FixedPriors_03.Rmd
f40f4906a5a2842a7e004ff3ec19b4c8 *inst/doc/FixedPriors_03.html
6535a4534e3a96ef8a41c6ecf5370764 *inst/doc/HierarchicalPriors_04.R
8dd907725a7fc27ffb599cc6804b5f9a *inst/doc/HierarchicalPriors_04.Rmd
310e7124e684c9ff29082abfca03edb6 *inst/doc/HierarchicalPriors_04.html
0a4014d067b109bd165c060c5ed74b84 *inst/doc/InputData_02.R
1f9fa1bc1d2eb0c5d9a42a75645ce860 *inst/doc/InputData_02.Rmd
b6fce047d7f7c45e0c813ca1548abb3a *inst/doc/InputData_02.html
2614c6329a7a51756c3fd5bed27b7937 *inst/doc/IntroductionCoPheScan_01.R
b07a98cb868bc72ca314f915c335995b *inst/doc/IntroductionCoPheScan_01.Rmd
bc329ba2eb976df95cc3daf32d15d71c *inst/doc/IntroductionCoPheScan_01.html
792c52ed8a69f80f4b14c2fd52f21d48 *inst/pkgdown.yml
4242f93e3e512ccc298369d2ede8490e *man/Hc.cutoff.fdr.Rd
7c41837d3d5db05ad70d4d0922032e7f *man/adjust_priors.Rd
f288146e4f380947d20cca76ea063185 *man/average_piks.Rd
774dea182c501f8a6ff0f1968f99a5d4 *man/average_piks_list.Rd
02846f7fb37ec9e176d5011f9edbaed9 *man/average_posterior_prob.Rd
b240339aee1890d21b33113278030ac7 *man/average_posterior_prob_list.Rd
c21bb9b5f7a5e874526efd1457676db9 *man/combine.bf.Rd
66004ecb09aea6963510092abac964fa *man/cophe.bf_bf.Rd
a32205141c5530d355a2ec1960605f96 *man/cophe.hyp.predict.Rd
6329a5685ad7efacf71ae78033cc5ff7 *man/cophe.multitrait.Rd
0dc6bf9666fcf2dde7f2aeda66a37e52 *man/cophe.prepare.dat.single.Rd
9a2c148eea18928f75a12c326c0a9017 *man/cophe.prepare.dat.susie.Rd
6c8a6895a37bf6fd6d7bc2ab8850892c *man/cophe.single.Rd
fc81a621e1f7fa492c6c696c3ea198df *man/cophe.single.lbf.Rd
fbd700a1d14448f1b2a38bcb406e2add *man/cophe.susie.Rd
0b602b5d28d2eefc7bd538add5eeee35 *man/cophe.susie.lbf.Rd
e30cac6650edc54c6c24e49fdb748c6d *man/cophe_heatmap.Rd
e98af3a4e4fbc3c6cf2854e5e12a6757 *man/cophe_multi_trait_data.Rd
e987b467487ddc4998d5fada008de03a *man/cophe_plot.Rd
16ced89f5e9444164a92790cdf61904c *man/cophescan-package.Rd
6d2ff662b1e4fa1a9e31e96dc8ea568f *man/figures/logo.png
2ae4c7a0e2a0f40a3e61c99bbb555f08 *man/get_beta.Rd
0143a13b43b89004c960cdf0104fc36a *man/get_posterior_prob.Rd
8f50680298e774d07ece75e1239d2c57 *man/hypothesis.priors.Rd
8f6577efd1bf1e15ff573efe7acb8a0d *man/logd_alpha.Rd
70cfa843774d603cbde63e766223dcdb *man/logd_beta.Rd
4d4c6bbf00aae4fd5547e9322926c02a *man/logd_gamma.Rd
2b6f6d65f0b495b97a0e2d225df0cd85 *man/loglik.Rd
ead60157ed5d491ba2c42a32b9b689b7 *man/logpost.Rd
78c73431949031deddd8832f42940860 *man/logpriors.Rd
165549bdc5663fe5613c9e399a6fe3aa *man/logsum.Rd
e7459be4dc24bf5ae3fcba528cb344fc *man/logsumexp.Rd
bb03fa290ef968fa8163e8965b2ac6d3 *man/metrop_run.Rd
6f8595c06809f50f22ec0fe0679fa81a *man/multitrait.simplify.Rd
6629e11ba3311e92fa7c6380b09305e9 *man/pars2pik.Rd
9aedae369d172e37d1def9a6648c4c61 *man/pars_init.Rd
2734750c58a65e5faca0e28b2442db69 *man/per.snp.priors.Rd
e3e9ba5f046e6dd07d4feb9c1da17102 *man/piks.Rd
80377953e140a9f83dc3bf7efebbb31e *man/plot_trait_manhat.Rd
898f14aedc49cc4257f5e9398f35451a *man/posterior_prob.Rd
0335074c3b38fddc87b38df12b4177ab *man/prepare_plot_data.Rd
a516875cb0c15935a3b95dfc3450d3c4 *man/propose.Rd
6fe4f56e6f9abc68821aa4b4f0335274 *man/run_metrop_priors.Rd
1c934ab3df0af6bb5638d81d18be5b6d *man/sample_alpha.Rd
db8b0d686937d1703567708c7206d793 *man/sample_beta.Rd
1450d770b54361df7a76850a0fba5bc1 *man/sample_gamma.Rd
4c794e61f32a1817592d370dc48da0ac *man/summary.cophe.Rd
1969b735d2cdd266dfc6491b62cdadad *man/target.Rd
d2773de8a526eba651ace8a09e431abb *src/Makevars
d2773de8a526eba651ace8a09e431abb *src/Makevars.win
65358ee1bacbe768722c1ab72f41ebf7 *src/RcppExports.cpp
8291ac555a9e9d365790b01462642698 *src/hier_priors.cpp
635a2bdc60819ee8dd50e6bfdee5a774 *tests/testthat.R
7f85cbe3069eafefb22a19f19e6784e2 *tests/testthat/test-hier.R
92223df5eba4480abe582f4508dc247e *tests/testthat/test-likelihood_calculations.R
ea520d4dd8d292584839ce49dae9d473 *vignettes/FixedPriors_03.Rmd
1e28b7207cc594c5341fc6c29a4e9937 *vignettes/HP-cophePlots-1.png
a2f3bb285b6f27b4acf59afe73d04f19 *vignettes/HP-cophePlots-2.png
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ccaef0c28ae02b4336a70605927d2467 *vignettes/HP-unnamed-chunk-8-1.png
fb7b7b104acd89ff2f25ed58d3f40a2d *vignettes/HP-unnamed-chunk-8-2.png
792f2528ec679c05a836da8ebc6784a8 *vignettes/HP-unnamed-chunk-8-3.png
8dd907725a7fc27ffb599cc6804b5f9a *vignettes/HierarchicalPriors_04.Rmd
1f9fa1bc1d2eb0c5d9a42a75645ce860 *vignettes/InputData_02.Rmd
b07a98cb868bc72ca314f915c335995b *vignettes/IntroductionCoPheScan_01.Rmd
