03d2be8626a320f5295bd5101f02b0f5 *DESCRIPTION
a90d2b92a07a8206ca1fa7d414110815 *NAMESPACE
6e6e3f59f059a1a50fca499f6f4c05a5 *NEWS.md
b04300b1ccb9c14b778f67086b13696f *R/AlleleTrim.R
a728db153543b7ad235507555b1e20b8 *R/BDstrat.R
c05f9a4ecad6ea3564d40bf5d4b80b7c *R/BDtoPyPop.R
92a52794017869a92cff279f21bc7845 *R/BuildAlleleListHistory.R
4f66bad6dec3b475d964419c0d84f1a2 *R/GIANT.R
cc22f67664cd8145bd7670bdc3aca032 *R/GLStoUNI.R
29a794019d946776184bee6f53454978 *R/GLupdater.R
32235ca9330bad46cbbcb832a2dab892 *R/SearchandBuildAlignments.R
bc61fd978182a07f7dfcc5ec1651150f *R/ThirdPartyFunctions.R
dbb7f8c51926e6866d3868fbd4053238 *R/UNItoGLS.R
9d59c53310b4da4615253a9036673cac *R/UpdateAll.R
5a6e5f6e3fc2291056e0d08508d77d31 *R/VersionValidation.R
d9ee22ce773344b6bc7493fbc41cb4d8 *R/accessoryFunctions.R
6ad8fbf70034cc0993e4a27ce10d4a9f *R/alignmentFull.R
11e076e9c4a37708f77733327afd07db *R/atlasFull.R
587f86b1bad54efa3d6e067d94bca47b *R/atlasMaker.R
64bcab7685407ad603820fc8660eb8d3 *R/buildAlignments.R
df9d8a4c4a6b62d63641905380818cb4 *R/buildGazeteer.R
848fb20ad1ce4609cce6d41d10974340 *R/checkgDNAStart.R
07b8724e51817deaf6ca5777d36d17d6 *R/compareSequences.R
74a7d89df75ef49e7f09f868e9916661 *R/data.R
3cb5e9e84729d04c2827819f010e3a61 *R/extractGeneTypes.R
cb0e98a3e18c8b41286c21189286fa86 *R/fragmentFeatureNames.R
96d415f042effa66157437f0fd968770 *R/globals.R
f2365fae1b0ab5c930766fe8c602df76 *R/locusValidator.R
2e98f685e435982135dec13d2a9d723a *R/motifMatch.R
8006c7b289b382d485c17e7e20958b63 *R/relRisk.R
888ab7d98e65e8b649a5505b86334a35 *README.md
21cbb07dedefdc7b588206270fae12e3 *build/vignette.rds
4ad6e6d21528fabfc16f906acd2f73b5 *data/GLSC.ex.rda
b3334e3e37cf0a7422bff943b93268f8 *data/GLstring.ex.rda
529c9a61885c094c8ca10c357162644d *data/HLAatlas.rda
937b08a7c672018b45e1e8ae350c824b *data/HLAgazeteer.rda
35d011df3744de2375f91a4d6a5b4dfb *data/IMGTHLAGeneTypes.rda
0b4ddd41998fb79b4d8f867cd5a7d06e *data/UNIFORMAT.example.rda
76f390a70cc907c4015fbbeb38fd30fd *data/alleleListHistory.rda
cd91d23000f598e8dc4fd948c8d4dae2 *data/fragmentFeatureNames.rda
143efdb1dc0d7306a0849011fa1aa09c *data/sHLAdata.rda
be11c7cdb124391436c954f8edd83ee4 *inst/doc/HLAtools.R
080d1ca8f27352a000205280f2d4c61f *inst/doc/HLAtools.Rmd
635770b5200abde6436028c7ff85e835 *inst/doc/HLAtools.html
d5ed72e117a4f5ad69023daec6f6f85d *man/BDstrat.Rd
de16b9ba9f380b7386b408c6346d49e2 *man/BDtoPyPop.Rd
df240edc9f349c7fb72ca0736d88c461 *man/GIANT.Rd
41ff16626b359d697f4b88a90a9f60cf *man/GLSC.ex.Rd
a1b3a82ddc52a9f7bf3caabab8a5f3a2 *man/GLStoUNI.Rd
96e06ce9f102659ffbe8f63dc1267207 *man/GLV.Rd
521a70b5ba98ee7059facc1bfdd7aca1 *man/GLV2.Rd
0af7cf3c06bc0550c66018a5c22b6ede *man/GLVhelper.Rd
2695cdd7da22377145e7bf1a5cedbf26 *man/GLstring.ex.Rd
a36e0ef29c6ed704bc7de384572d8473 *man/GLtoUN.Rd
7b155df243d7a7f2f473d2938133c308 *man/GLupdate.Rd
4124fd9a9463073ac1d486065eae6dd8 *man/GLvalidate.Rd
974b2f93b3ad274207de7cc2ab64a83a *man/HLAatlas.Rd
f7a489c3300d3e631e759e113c809efe *man/HLAgazeteer.Rd
9a7d050530e5296e397b12e5d3b3ff39 *man/IMGTHLAGeneTypes.Rd
f21813133830fb6c74680b87974a8e74 *man/UNIFORMAT.example.Rd
8ed4014c9560ce54a86c6d6ed2028e63 *man/UNItoGLS.Rd
b242556fadbd6ad11a847bac6aeb5608 *man/UNtoGL.Rd
bb20ceb7e8024b3227ce9e16d3067220 *man/addCodonLine.Rd
cb912a8b02542a0e2a2dd7b362e4e544 *man/alignmentFull.Rd
adc058721d2418d995966250a43db89d *man/alignmentSearch.Rd
b430c7803803f450f0c31935e321337f *man/alleleListHistory.Rd
7b20c0b5202e237ad4ce77987dd2a6a8 *man/alleleTrim.Rd
74fab9faae8ff803186127bb468ec350 *man/atlasFull.Rd
23e5f50119412413ac45c1b082d69ad5 *man/atlasMaker.Rd
1810c0f77d7c9a81ba80cde0b1fd239d *man/buildAlignments.Rd
dcf2cd1d02a394ac222506b2daf7f007 *man/buildGazeteer.Rd
c6afb527f8f935a6112e0c49c0de61c2 *man/buildIMGTHLAGeneTypes.Rd
8d3557af79e05a5e696dc00da6544871 *man/checkAlignType.Rd
4cb50285c5dfe48471768669f26e0e8a *man/checkSource.Rd
21e6d80378c54fc6a3b5cc6162cb51cb *man/checkVersion.Rd
ab328484ce60c9fb51f9831f966c5faf *man/checkgDNAstart.Rd
b55662af4c911aff271a9c1feed673f3 *man/compareSequences.Rd
379d63c895a90c3cb9e957d1063262e2 *man/convertAny.Rd
4a603ba5f38d5d5a05b0b599577e0680 *man/countSpaces.Rd
4e308c839ed7021aa56685a8202e89fb *man/customAlign.Rd
14e32623092fc8503188ebf5ba9f8fdd *man/expandVersion.Rd
b0c3060468c92e89db4fcd34d79e1a00 *man/ffN.Rd
6eaa0cab69f5a1ed7ceb9bdd95a6cb93 *man/formatHead.Rd
221d00d466027a02a6c396ab5ea653f0 *man/fragmentFeatureNames.Rd
a72d7f152a2f01ac35631252853a2aee *man/getAlignmentNames.Rd
b1cbaf6affd2c9f3e0335baa5b431899 *man/getField.Rd
3cb19bd02735406462e0b741f21391a9 *man/getLatestVersion.Rd
5a72744a603cecfb08e2379092c6bb12 *man/motifMatch.Rd
ecdab256156f25b3033386764b45a04d *man/multiAlign.Rd
5c2e648797b7768da1d364270b4fe82c *man/multiAlleleTrim.Rd
346b80d2da26416b73e0d7309a6fcecf *man/multiGLStoUNI.Rd
c12231d56b1d44a022283766d8b6de6f *man/multiLocusValidation.Rd
a4e602a62f1f3c3546a9e519247abad6 *man/multiQueryRelease.Rd
beefa086889d41e26fe2091157a93795 *man/multiSearch.Rd
d4fede67878879822c3ae895fb13c47b *man/multiTranslateGLstring.Rd
f64bfe0ead678aae31d4ad0d075de683 *man/multiUNItoGLS.Rd
29fff8ad49da3210209f8dd5fe545991 *man/multiUpdateGL.Rd
5885e7af6201ee78a4ffc125a76ec161 *man/numFields.Rd
ac5e3b41b4a5345524035de8f4d9a136 *man/parseAlignmentHead.Rd
a1621d1a24a04bb72ed32573a6bb5933 *man/posSort.Rd
bb8cc3c4ebf4f49ce49bc8ce3c73b302 *man/pypopHeaders.Rd
b8753a9605a3dbf11de15ad1a29ccd2f *man/queryPositions.Rd
1baa23e4a14cfaa21e15ab4ba8c04241 *man/queryRelease.Rd
cac467100a6f3e0197202fa91e1f0df3 *man/redec.Rd
c4d51cc93f9429c86b5dd4fd6ab5283c *man/relRisk.Rd
887d6c54e4beed89047743671030322f *man/repoVersion.Rd
1d4cdece918816f374c361900ee8524b *man/sHLAdata.Rd
ab2b2d15b0f82e2100488181894f9144 *man/squashVersion.Rd
76459de77c1e64d19d630fa5db2a7cd0 *man/translateAllele.Rd
fdf2e591f0c9d9a6fea5983e63b736ac *man/translateGLstring.Rd
2844055b2b578c0d765425e14056d89e *man/typeToSource.Rd
5e774d6ef33b5bd41f33ab813f7cdc14 *man/uniAlign.Rd
8c46f35549720b49cb0d7953e846456f *man/uniSearch.Rd
9630e59e0aff5c9f171464d9a0ed98da *man/updateAll.Rd
9b758bc621fe9a98c8c65e130617242d *man/updateAlleleListHistory.Rd
025db950d22f14259a24f85cb60106bd *man/updateGL.Rd
8857e265ef5e18e43f48419ec3661b59 *man/validateAllele.Rd
2e2bec1f8da1679af6f292f607d2fa1b *man/validateGLstring.Rd
54958fa0bd3a0d2f9528a2b81443d328 *man/validateLocus.Rd
8ffa6a67b887a92aa0a7be6c7c3f1cd2 *man/validateMotif.Rd
308ed84070083c24e503d77b950fb319 *man/validatePositions.Rd
2cd390213bf65fa0ff8af0ac25c56419 *man/validateUniformat.Rd
e7ed97218d5649d64b7e61151639a8f4 *man/validateVersion.Rd
e347561104eca2fda24dc24db0335c45 *man/variantTable.Rd
e38efd68f54df57c45223f3c4e595c1c *man/verifyAllele.Rd
080d1ca8f27352a000205280f2d4c61f *vignettes/HLAtools.Rmd
