2a6dbbac6856eba8199158f6b02dcf5f *DESCRIPTION
d9995f42b321ae97e0e30ba572944448 *NAMESPACE
bc31d7fc921a541dcb233baa877c3053 *NEWS.md
8831d993dfe84b48390686f137d0dd62 *R/CharPart.R
b10011b03e096edfa6a1498dd86f63fb *R/ST&P_FBD.R
e4cef7c296faf2278a6184962fb754cb *R/ST&P_Rates.R
4bccef0a2459b46d9d3ba6fac96c0b08 *R/SelectionStrength.R
6a3e7c7289272312eb8e3b8e887c4f21 *R/helpers.R
4a55c898b5cda22277ccc3aa4fc9ee25 *R/helpers_beast2.R
c47d0a7e5890e74d2baf666fa3efffd8 *R/treesWoffset.R
beefe34a145c8ef7f7dc91993afa1774 *build/vignette.rds
ee23cfc3a2c52c21777d93ee281b64f6 *data/RateTable_Means_1p_Clades.rda
45860a13533fb0348c39d7b54b6bc6e6 *data/RateTable_Means_3p_Clades.rda
d19bd6cd604b35f240c6385e8a0d61d8 *data/characters.rda
a7f685c4825eacdaba0a814e528ce673 *data/datalist
5665c027a34f25fb0e42a48f3509a368 *data/post_trees.rda
8b6a705fcb7b53826e6614d1bbef540b *data/posterior1p.rda
634fe79a5f7f518f497cf52c2a7b468f *data/posterior3p.rda
5ccf1c7c78b552f1cbd1c719b22270a8 *data/tree1p.rda
5609bd351412b4786a88e399e5f4e215 *data/tree3p.rda
3b4d4bf9d3ea64794eb7684d2d940dc6 *data/tree_clock1.rda
d7a381d6c61b5a69a2c9742e959d5c21 *data/tree_clock2.rda
c8cf4f7e0ac3db754896e42a655fab81 *inst/CITATION
34560a3788919de27f7fff2009d53c88 *inst/doc/char-part.R
339476e162756b6139f9cd4da988d394 *inst/doc/char-part.Rmd
7a01e40e63f7962a880b2ee993a604ef *inst/doc/char-part.html
9cf6967841277e58d22d9080c7096261 *inst/doc/data_treatment.R
e6e80be5f996228f053ced0e0ea1b8f0 *inst/doc/data_treatment.Rmd
68f3acdfe57ea5487b4ec9f30ef71ba9 *inst/doc/data_treatment.html
dcb77abb6acdb92d53683f64247b7b9f *inst/doc/fbd-params.R
87bbf33135cdd23687b652abc0998e1a *inst/doc/fbd-params.Rmd
c6af7638db01c94ad5d7514ea9c31ef8 *inst/doc/fbd-params.html
a60008410fa811d35646e5c695eac900 *inst/doc/offset_handling.R
1e89e3d4773ab702f85de06dd06eedbc *inst/doc/offset_handling.Rmd
158a2edd475ba0c14612eeb9d03b894f *inst/doc/offset_handling.html
62358827a430037009a2b4324e91b70c *inst/doc/rates-selection_BEAST2.R
dd657ac1cbe615b70821373536254e45 *inst/doc/rates-selection_BEAST2.Rmd
ff30daa62730c158aa822f97492e77a1 *inst/doc/rates-selection_BEAST2.html
d2995c2753da9f13dc28660ef2255a64 *inst/doc/rates-selection_MrBayes.R
004016c6b462153269be180b62ee93f9 *inst/doc/rates-selection_MrBayes.Rmd
4fde765b93828253fb105f72c06e79a8 *inst/doc/rates-selection_MrBayes.html
4206c5d7600051576184475030c98c42 *inst/extdata/DataMatrix.nex
8ef1c37632102d10b64bb87edd085178 *inst/extdata/Penguins_MCC_dna.t
385dd0e97b96a5ce6e24ca0e9f4b5d4c *inst/extdata/Penguins_MCC_morpho_part1.t
aa4435268473b6bf4c02024332153143 *inst/extdata/Penguins_MCC_morpho_part2.t
4c493f701ccb9a538c0aa4f000372753 *inst/extdata/Penguins_MCC_morpho_part3.t
96e9835423c7e0d54eb434ecad79c3bb *inst/extdata/Penguins_Mol.nex
c81d9e3db56291cc213349ce1c8cc2c3 *inst/extdata/Penguins_Morpho(VarCh)_Extant.nex
ec4cf274ca82395fb2543e726021fa8c *inst/extdata/Penguins_Morpho(VarCha).nex
1e4b13ca8c749045e91a96f736190fb2 *inst/extdata/Penguins_log.log
4139e11e2bc448013078119e4bc0abd2 *inst/extdata/RateTable_Means_Clades.csv
31b121f7914b9a2b927ac89d85771189 *inst/extdata/RateTable_Medians_Clades.csv
16c14239596af4feba320c3d74d5dd90 *inst/extdata/ex_FBD_BDSKY.log
4ee125a8b93d97a16407c73f343db290 *inst/extdata/ex_FBD_SA.log
d887981451489f23b106cf7da0b3d90c *inst/extdata/ex_offset.MCC.tre
cfbd206f389deefba4d01cdd19d707a3 *inst/extdata/ex_offset.log
743be0d6115a619a463651c2dbfbf94d *inst/extdata/ex_offset.trees
19db334dc92a06538d1083d7c521e041 *inst/extdata/ex_pwt_rate_table.csv
592016298464084d7af99e520afbc04c *inst/extdata/tree_mb_dummy.tre
e5153775281ea873962136fc9d132598 *man/FBD_dens_plot.Rd
2eab710189180bb85b34b4bdfd1ae234 *man/FBD_normality_plot.Rd
1246270bca56ba15b9ead732eaa049c5 *man/FBD_reshape.Rd
2259e4c4e655946509b02e4f3d9d1889 *man/FBD_summary.Rd
1a52da813be024a19e131e5e26de7429 *man/FBD_tests1.Rd
85ae3ff15d7bb6b5d281e68a08a02473 *man/FBD_tests2.Rd
bca1ff6f0f8a94cc87c25f85ea686dc4 *man/RateTable_Means_1p_Clades.Rd
fe030b76fe1f3a4dc2fa346a48908497 *man/RateTable_Means_3p_Clades.Rd
1efaf510c04f3c4bf4f65fdbd92e8e43 *man/characters.Rd
602406e24a21c14e9564fb79094382e2 *man/clock_reshape.Rd
218f887c3fe133a688ba25ad29cc5b9a *man/clockrate_dens_plot.Rd
561e913ad2329bb64d96f15b61f3e784 *man/clockrate_reg_plot.Rd
0c32507f7ebc684293d1077fb204112d *man/clockrate_summary.Rd
df4954b7151c46a93c77bc8e8622770d *man/cluster_to_nexus.Rd
c27f338bb1a948cda3d3cb711b903559 *man/combine_log.Rd
bcd603140e7b99deac58f2f23879bfeb *man/drop.dummy.beast.Rd
74a824bdfc2efaebc46d9209a4ce30b6 *man/drop.dummy.mb.Rd
ca7eafbac5bb4c8d75fe8e7529db9efe *man/get_clockrate_table_BEAST2.Rd
41f95841e48c60168c90175a0f38b809 *man/get_clockrate_table_MrBayes.Rd
8f9ffdcaa967df537166fc7a1cd199c8 *man/get_gower_dist.Rd
f05c2e5189dfe8e7a610988cc765db5a *man/get_pwt_rates_BEAST2.Rd
b3f7e8b91b4093d3abb559d44024d63e *man/get_pwt_rates_MrBayes.Rd
bf87cf8d38a36f69291b8d600094d642 *man/get_sil_widths.Rd
417080159cd08631661e1bc8d751544c *man/make_clusters.Rd
c8149e4af2b7bf7d6d167f3ac018f021 *man/offset.to.dummy.Rd
a614617520e50ea060cef42605f1dc26 *man/offset.to.dummy.metadata.Rd
d96318496dbb844cc818fd0a1d3ae3eb *man/plot_back_rates.Rd
e6aaf10da9cf23c733eda52c5fd1a4f9 *man/plot_treerates_sgn.Rd
563e429f9f14960db7888380174a8d84 *man/post_trees.Rd
a0fbb4f2220ca4496392cf158383bfe6 *man/posterior1p.Rd
047f0f8736db2724c27df89904912f0c *man/posterior3p.Rd
7f133ef6a4703c0a8e733439979130b6 *man/tree1p.Rd
84e973baee204cd969452d7fb5d37ac1 *man/tree3p.Rd
68c6c1fd9fecac42faa93341398bec8a *man/tree_clock1.Rd
f93f8b6c0702a5a599c1f4533288bfde *man/tree_clock2.Rd
8083d81b42d45cd7a2a3eef39a9b08ac *man/write.beast.treedata.Rd
f818d5a52f707ad29633af1dba9ec8f7 *man/write_partitioned_alignments.Rd
339476e162756b6139f9cd4da988d394 *vignettes/char-part.Rmd
e6e80be5f996228f053ced0e0ea1b8f0 *vignettes/data_treatment.Rmd
87bbf33135cdd23687b652abc0998e1a *vignettes/fbd-params.Rmd
1e89e3d4773ab702f85de06dd06eedbc *vignettes/offset_handling.Rmd
dd657ac1cbe615b70821373536254e45 *vignettes/rates-selection_BEAST2.Rmd
004016c6b462153269be180b62ee93f9 *vignettes/rates-selection_MrBayes.Rmd
0bc65d164e0852846a22b5459c10c835 *vignettes/references.bib
