6bc2e824998ac569c3de3174eae3ca57 *DESCRIPTION
8c466e410715826a7a011f3da9279ed8 *LICENSE
38640b4d1eae4fe173085edcdb696a89 *NAMESPACE
8f8c0fc3e63ed1a8f01699d50a720476 *NEWS.md
46937a7439703b3ab73e27d1207579b3 *R/aa_amr-package.R
5330148b8dcaf66c6e45c06ecdf72c63 *R/aa_globals.R
81a2276e58f0d0ff34d3b1c790204b40 *R/aa_helper_functions.R
e0ee453b0a2edabbd9f589aa849fd29b *R/aa_helper_pm_functions.R
cab398e4e161c126afb756f1a70af032 *R/aa_options.R
01dd4d0cc32032200f4d36925b6f19f8 *R/ab.R
1743805befaaeae96ee8bf2aeaead1a7 *R/ab_from_text.R
fa5b4ef7faee7e40a2eee13ec1ca2677 *R/ab_property.R
376e55831c9c315176b21b8a0921f9d1 *R/age.R
0819553cc9f99a0c8e38e7c5f93e067e *R/amr_selectors.R
479e21394b1631ba3e4d0625ee3ec2ec *R/antibiogram.R
74e137c5fbb6fc98f2a64ed30621635d *R/atc_online.R
b8fe73ddf2e5623f6a285dc15e19affc *R/av.R
8ab57e81b0599dd69eef958e2ccf925d *R/av_from_text.R
79539548133effdf7629c83c7d93490c *R/av_property.R
9d7219653b48c9a92a37d29be0e9f7ad *R/availability.R
332f7c121bbabcae2aeb8b91896f6482 *R/bug_drug_combinations.R
c358bb6163bfa8789b81c62f30035e34 *R/count.R
8a42f226228748d29b836fca445eb10d *R/custom_antimicrobials.R
d60f0d553b2c5ba2c454c08720feee35 *R/custom_eucast_rules.R
69f0e962d4ae85fd68e1e6ee585817b3 *R/custom_mdro_guideline.R
2d1d14454df75c127e925b9f7a2d5601 *R/custom_microorganisms.R
738a9bd82e6657be1718fb0c391d39d0 *R/data.R
45653b1830a84cf6bc8acfa98f973a10 *R/disk.R
aea3d7552f9454c54db14a5baedf6389 *R/eucast_rules.R
724e15e5e13566a8512577aa453313ff *R/export_biosample.R
a26b46f855c0ef3ee29d6f65f0120dcf *R/first_isolate.R
a8d1a35e652546bc8856a7a4e25d50f2 *R/g.test.R
24d9d35fa6100f50349ee5f568919746 *R/get_episode.R
15ab7c53fbd0e51947805ad0d72da94e *R/ggplot_pca.R
25e8c1338062c0b8b419e843739f7d40 *R/ggplot_sir.R
3510349de1613c5d0c720127435c6bae *R/guess_ab_col.R
2a78dc2129e0cabed5f2aad18a7292af *R/italicise_taxonomy.R
c1e02edb4153c77421d955d55d13a86d *R/join_microorganisms.R
b68bc48ab6d1030ef432b11569e85412 *R/key_antimicrobials.R
07aaebd991ee84234d745e6d22e22903 *R/kurtosis.R
548cf360a8e8b98535150de6389ad30a *R/like.R
94c761ef2e31d97c22477d03981665ff *R/mdro.R
a76c177d584b1894c6a716f1e6cfa406 *R/mean_amr_distance.R
9fbf4e995a6d406769f254f14bed1e43 *R/mic.R
cd762441c011892ef971ce21eaf6b221 *R/mo.R
29692ccd186c0431e4f730456a126217 *R/mo_matching_score.R
77016be8bfa4778ca032122ec9ea67ca *R/mo_property.R
645e1163e7498e203de8298bbcd41517 *R/mo_source.R
7177de4454d6299632dc9572eb8ed1cb *R/pca.R
236b523f7b3793d1ead45fc2a45bc8fb *R/plotting.R
eadc80bade7813e8890458a611127712 *R/proportion.R
e34aca228f8bce85a45d5dd664e375d6 *R/random.R
0794db967cca244792fb8692a1947ce2 *R/resistance_predict.R
1607823088edcf63328e46c9ac0cb243 *R/sir.R
e07ed500f0072d328c5793b1e6994cfc *R/sir_calc.R
9f9d813a8d7d3b036581c2ba455f6293 *R/sir_df.R
22bf2c735e909c4457842367e8169047 *R/skewness.R
ebb3190e0cccce3e55e37a919a7d974b *R/sysdata.rda
74ba99768bc16e6d70966c6c46525602 *R/top_n_microorganisms.R
78be54cea9fb02917086a856a548d5ff *R/translate.R
993d05789987fb6722ba33170c4250b7 *R/vctrs.R
1a6badb6d7044d67de1e07f31bcf4be9 *R/whocc.R
ac28d5d31c783960ef5888675d149f6b *R/zz_deprecated.R
cc94d03ba47c840e57e760f897dbc444 *R/zzz.R
9c100d2380b4d7fb0c2df8dff720b31c *README.md
b52aabe9a2757fc86742763db9dafc9b *build/partial.rdb
7f7df87b93f72fa3d36c3d3d836dd001 *build/vignette.rds
4ca011b19e22feecc1e1775884ab2d68 *data/WHONET.rda
46efbbf3241f244010beae08eba84da7 *data/antibiotics.rda
de8983c14454e54900e14cdf48c937a0 *data/antimicrobials.rda
5d7868cbd7dc95324b6236d69e3d9e42 *data/antivirals.rda
033601c4d292035ebc0b87bebcf70fc3 *data/clinical_breakpoints.rda
ba34a30486866bb9b6091f148c4f313e *data/dosage.rda
98a3c0502073c384bd4bf86ff16a501a *data/example_isolates.rda
a0bfcc9c91023d822e843ff9aae3da74 *data/example_isolates_unclean.rda
268ec96bcbc856798207f121327716fc *data/intrinsic_resistant.rda
1595fccb3fda6db6ea42425a796dfbf6 *data/microorganisms.codes.rda
b484cbd59dc3ac7376083fd55cb7d16a *data/microorganisms.groups.rda
1b9e9b82e537056f3b7c79bf543a6e9e *data/microorganisms.rda
77d6b438a3af3642e6677e433cccad3b *inst/CITATION
14530226c2f8942fab14785f800a1e83 *inst/doc/AMR_for_Python.R
5a915d6edd92d27835a8aa12f49da82a *inst/doc/AMR_for_Python.Rmd
2af96263a7c6690ec387cbb681f0c4d6 *inst/doc/AMR_for_Python.html
14530226c2f8942fab14785f800a1e83 *inst/doc/welcome_to_AMR.R
a4dff6adaaccd41d0724defc6c6c1096 *inst/doc/welcome_to_AMR.Rmd
2a5953e39f9fae042b3b5b2520a948f9 *inst/doc/welcome_to_AMR.html
f6245c40d0e71d29bf0658200f2697a7 *inst/rstudio/addins.dcf
85870992ced3e61b4c54c1f00375443b *man/AMR-deprecated.Rd
03cc8620d110625fb4c9adc1395a525e *man/AMR-options.Rd
fa5394772a0484ed4cc6dd12b36e9c56 *man/AMR.Rd
a316a3e5e4e5d22a3b45bde28bbeb0d9 *man/WHOCC.Rd
8ea33360e5a129c3df4cb4b471ef390e *man/WHONET.Rd
903786e45fce5a79438158467de7cfaa *man/ab_from_text.Rd
c34ec28eb9077a8b65ded343d4485d3e *man/ab_property.Rd
fc5acbfac1ed311bcded91a4a664b4d9 *man/add_custom_antimicrobials.Rd
cbf8629b32ef389581d4e93e145117c8 *man/add_custom_microorganisms.Rd
d7e4eb7900c104a535d64dad80ad19fc *man/age.Rd
5cb1aa73b5f13151e0c40b1e6704852d *man/age_groups.Rd
f942ff08c210b9407d6401c3f0f7c50e *man/antibiogram.Rd
e5b6c56f3a1c7deaf0f7510455e4845f *man/antimicrobial_selectors.Rd
61e0b4b7e38f0ff03ffd3b7f59b425c3 *man/antimicrobials.Rd
527a6393baef529ab0932637729fff73 *man/as.ab.Rd
4b9bb761525d06a0a33c9b11f50364c3 *man/as.av.Rd
cc3f804cd7a9b110ca04cac8e0f1e2e8 *man/as.disk.Rd
b45c35ce1b3ff3ad8776b7587be3a6d1 *man/as.mic.Rd
df4cb99ddaa5e659d79e855f0870ea7f *man/as.mo.Rd
724ed6ee2d70a2ac8b1d6dd660b4d979 *man/as.sir.Rd
2fedfa22d017665e2beaf3302c98b1ab *man/atc_online.Rd
d4a4d47b7d52bef5a34508d31f8b403a *man/av_from_text.Rd
2f5685cb654b986ee2f8fb543512d839 *man/av_property.Rd
ddb3e094fd91600da3cb08b7ce12cb36 *man/availability.Rd
9b3b8b7b49270f7d91673d785f1fe103 *man/bug_drug_combinations.Rd
7d1d513b568a99b48db3388b5f3d038b *man/clinical_breakpoints.Rd
58bc64ccd687d6325e937b086ba44dd0 *man/count.Rd
aee03530feb0e8ada5636cdc4bed6ecd *man/custom_eucast_rules.Rd
bcac1fe664da8a82b33702ef3b803014 *man/custom_mdro_guideline.Rd
cc01fac78b23855928fd2592d1efd9b9 *man/dosage.Rd
589d35f83a59eecc1ffb142659453b21 *man/eucast_rules.Rd
7e524906b2dd977f1776b2f282c8e177 *man/example_isolates.Rd
4b406193e879c9febc04e7ccd5f9855d *man/example_isolates_unclean.Rd
cab11e8a5cc74c3fd783a1f935d56231 *man/export_ncbi_biosample.Rd
0cece05972813adcaae5f729ef617585 *man/first_isolate.Rd
a11a2e5854bb598be431146aaeafa054 *man/g.test.Rd
79e6fcf6d7c668187ce732a2f74471f8 *man/get_episode.Rd
17b385ffbd18181a3f087f61fd7c2638 *man/ggplot_pca.Rd
96cd0a4c800b046378aa003c99be910c *man/ggplot_sir.Rd
d8e277a377afcc8bc00af6cdc04cc250 *man/guess_ab_col.Rd
074a33ed824c6044de62542c30e0c918 *man/intrinsic_resistant.Rd
04ffedb07ca43007c89a8115cd843dbb *man/italicise_taxonomy.Rd
e20f36fdf252a859bfe53ac31384d6d6 *man/join.Rd
e8000c4670deb05a2b8013a57505b20f *man/key_antimicrobials.Rd
794329baebb77ec49b33ebd14b6352dc *man/kurtosis.Rd
36fe43bf633d39eeaabba9237fd61c36 *man/like.Rd
21629b9b2722475bf2b1c0025401db91 *man/mdro.Rd
a78555302b460f33b435f6155b235f06 *man/mean_amr_distance.Rd
c55ec0a8237cee8a42a0b5cdd76410b3 *man/microorganisms.Rd
05a40da2da681da32a707d6b69c686be *man/microorganisms.codes.Rd
46a8cc16310d007dd5c32c6f1e3b598e *man/microorganisms.groups.Rd
814a9422eb90e73c459237e4414d9ef5 *man/mo_matching_score.Rd
8c9282f99ec57a6449c805ddd6916559 *man/mo_property.Rd
501f06667aa08014206dbbcf3fb826f9 *man/mo_source.Rd
816ee469682442e0ffc1843e58c0b865 *man/pca.Rd
452bd70f3b81a64dc10ba574c9e0032f *man/plot.Rd
cde6150bea8b1ccfcc3e859df0f4f014 *man/proportion.Rd
d8af6bc021df6005fd14e0b879c0119f *man/random.Rd
be2e1936f0075cb902c44ba2122c23e3 *man/resistance_predict.Rd
f16056e03854c6bbdb75ad8ad731c980 *man/skewness.Rd
a1726473363e923374c2367a6097558f *man/top_n_microorganisms.Rd
17855c8ca6c0fb436d448daaada27241 *man/translate.Rd
b1e51ff54d33e5b5d92afc2039cfcaa8 *tests/testthat.R
19ddb82f142538880cdcaac2c2175bcb *tests/testthat/helper-functions.R
ccd1c2ef2eba2ed62b0c2ed725ac97c8 *tests/testthat/test-_deprecated.R
cc8183099f7ea2600dc3f428730993cd *tests/testthat/test-_misc.R
be56946e2514c1106ad7d25e5dd69b9e *tests/testthat/test-ab.R
955d589da8f1a371a98e83315f4a570c *tests/testthat/test-ab_from_text.R
71d400231ec0113ee36e7d141c5d1716 *tests/testthat/test-ab_property.R
03d85e367ab27e127a3f024d63eb2438 *tests/testthat/test-age.R
cec3a6ed9ff2311a64097f9060ae82d5 *tests/testthat/test-amr_selectors.R
e5c63fbc3c5dcb265321cb39f0fcd1c4 *tests/testthat/test-antibiogram.R
205147bf9db84a3d8fac430dcf9167b7 *tests/testthat/test-atc_online.R
227cb1f1d273f9344407bae87492e409 *tests/testthat/test-av.R
fcc2d3904a5f92ba2d6da4dbc38dfa05 *tests/testthat/test-av_from_text.R
364900d53239fca66d4601f1a297e776 *tests/testthat/test-av_property.R
4d6b9b61909b2696616bfcb3b300f3b9 *tests/testthat/test-availability.R
140beae41b3ff7bb28e69aaf5ea1f23d *tests/testthat/test-bug_drug_combinations.R
94de4c70a69312ef7c3573a7d46d886f *tests/testthat/test-count.R
4dfbffeb18935ed0daf476597e97ea30 *tests/testthat/test-custom_antimicrobials.R
e2106bcc402d9ef24adda71e76d9d118 *tests/testthat/test-custom_microorganisms.R
f9f07a1478a5b836c2c06c92a9ff926e *tests/testthat/test-data.R
c1697d93a81f2af2b7858093ed69b2c8 *tests/testthat/test-disk.R
66fa43bd433f8a6a7a6e9f0e7e11f3cd *tests/testthat/test-eucast_rules.R
94370cf5621f4c1baaf70bdbdd3e3c21 *tests/testthat/test-first_isolate.R
22c29e9b8135e296a0bfe62071657f47 *tests/testthat/test-g.test.R
540ffd657c066a4bf272bbab112dad87 *tests/testthat/test-get_episode.R
e752d6d5fab4370643a759d7eb24a051 *tests/testthat/test-ggplot_sir.R
a8595eded7b15986bde8def43616d3c2 *tests/testthat/test-guess_ab_col.R
a9424dff246cac93859db5598eb98843 *tests/testthat/test-italicise_taxonomy.R
686b5e49b4c669d9917fea18fd30c081 *tests/testthat/test-join_microorganisms.R
e2498a596184cd32ba131b5c3a0e290e *tests/testthat/test-key_antimicrobials.R
5ba43304fea207fb4edb26aeeab401f3 *tests/testthat/test-kurtosis.R
c6aa9c82842e12d84c1e0889ccaa10ba *tests/testthat/test-like.R
43ccad17942889557038bb00cfad1f5e *tests/testthat/test-mdro.R
4f7026951500fd26639711e83220e546 *tests/testthat/test-mean_amr_distance.R
388efcee44c49e434f9876a34262062e *tests/testthat/test-mic.R
18307e1334b9e968fcc03f7a677e26ed *tests/testthat/test-mo.R
84ca1b78dd772ba7768e0ac008030cc3 *tests/testthat/test-mo_property.R
06812356aeae4161821fa7a6fe7b87e8 *tests/testthat/test-pca.R
bb26b859a950eb92f4a5565c4bc2700c *tests/testthat/test-plotting.R
8b2883d54da9045c0f309b0604c91391 *tests/testthat/test-proportion.R
a2fc8c838e2669a81ee4d3f5773e4733 *tests/testthat/test-random.R
b01a9b94d6288f6daed8b23c6096c7a0 *tests/testthat/test-sir.R
b2a6c774014899d1419a649231d58db7 *tests/testthat/test-skewness.R
0a9b33017726a9307a70101099e18ada *tests/testthat/test-top_n_microorganisms.R
579b8ba5c8e1d6ad4b299c6a5dff3ad9 *tests/testthat/test-translate.R
3df3a1533e06c015cbb02a1908ecc1ac *tests/testthat/test-vctrs.R
e141234d9093e945106c1faeee31e920 *tests/testthat/test-zzz.R
b9a374a8a2d2888b170646cb57bcf0f6 *tests/tinytest.R.old
5a915d6edd92d27835a8aa12f49da82a *vignettes/AMR_for_Python.Rmd
a4dff6adaaccd41d0724defc6c6c1096 *vignettes/welcome_to_AMR.Rmd
