genio: Genetics Input/Output Functions

Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.

Version:	1.1.2
Imports:	readr (≥ 2.0.0), tibble, dplyr, Rcpp
LinkingTo:	Rcpp
Suggests:	testthat, knitr, rmarkdown, BEDMatrix, snpStats, lobstr
Published:	2023-01-06
DOI:	10.32614/CRAN.package.genio
Author:	Alejandro Ochoa [aut, cre]
Maintainer:	Alejandro Ochoa <alejandro.ochoa at duke.edu>
BugReports:	https://github.com/OchoaLab/genio/issues
License:	GPL-3
URL:	https://github.com/OchoaLab/genio
NeedsCompilation:	yes
Materials:	README, NEWS
CRAN checks:	genio results

Documentation:

Reference manual:	genio.html , genio.pdf
Vignettes:	Read and write BED files with 'genio' (source, R code)

Downloads:

Package source:	genio_1.1.2.tar.gz
Windows binaries:	r-devel: genio_1.1.2.zip, r-release: genio_1.1.2.zip, r-oldrel: genio_1.1.2.zip
macOS binaries:	r-release (arm64): genio_1.1.2.tgz, r-oldrel (arm64): genio_1.1.2.tgz, r-release (x86_64): genio_1.1.2.tgz, r-oldrel (x86_64): genio_1.1.2.tgz
Old sources:	genio archive

Reverse dependencies:

Reverse imports:	jackstraw, lit, modACDC, smer
Reverse suggests:	gcatest, lfa, MoBPS

Linking:

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