Bug Fixes
- Fixing error with previous upload
Bug Fixes
- Minor adjustments to deal with new version of ggplot2
Bug Fixes
- Fixes to background.buffer
Bug Fixes
- Fixed clamping issue with identity test
- Fixes to raster.standardize
Bug Fixes
- Updated Readme file
- Fixes to new maxent interface
New features
- Updated the entire package to use terra instead of raster
- Numerous other bug fixes and behind-the-scenes improvements
Bug Fixes
- Fixed issues with background buffer when mask and points didn’t
overlap
- Added citation for breadth measurements
Bug Fixes
- Permutations for background tests were selecting presences from both
species’ ranges, leading to incorrect values for hypothesis tests.
Bug Fixes
- Raes and ter Steege-style tests were returning incorrect evaluate
objects, although plots and p values were correct
- test.prop = “block” wasn’t working correctly
Enhancements
- Suppressing maxent startup messages by default
- Added support for bias layers to modeling functions
- Added check.env function to homogenize raster stacks so NAs
propagate across layers
Enhancements
- Brought up to date for new spatstat changes
- Removed ppmlasso until it is brought back on
CRAN
Enhancements
- Added a new general-purpose function for making background layers
from point data. It can do both circular buffers and buffered convex
hulls, and can return points, a polygon, or a raster. Converted the
existing background buffer functions to just call this one, and will
eventually deprecate the single-application functions.
- Added ability to select which corner you want for “block”
validation.
- Added a function called multi.variogram which takes a
raster stack, builds a variogram for each layer, and then plots the
gamma for each variable as a function of distance, scaled by the maximum
gama for that variable. This allows users to get some idea of the level
of spatial autocorrelation in each predictor variable.
Bug fixes
- Minor update to fix an rgdal import that was making CRAN angry
Bug fixes
- Minor update to fix an rgdal import that was making CRAN angry
Enhancements
- Added variable importance tests via interface with the vip
package
- Added clamping for the predict functions, including plots
of where clamping is happening
- Added clamping for model construction functions, with a TRUE/FALSE
switch defaulting to TRUE
- Changed naming conventions for predict functions so that
the suitability raster is in the $suitability slot, just as with
modeling functions
- Added progress bars for a lot of tests
- Added “verbose” option for a lot of functions, defaulting to
FALSE
Bug fixes
- Fixed interactive.plot generic and moved the function to its own
file to make it easier to extend
- Temporarily suppressing some warnings coming out of leaflet
that are being produced by the recent rgdal changes
- Fixed background sampling code to resample when necessary
- Changed enmtools.ranger demo code to actually use
ranger instead of rf
- Fixed code for calculating p values for some of the hypothesis
tests, the old code was getting wrong answers when there were repeated
values