Last updated on 2024-06-17 01:48:52 CEST.
| Package | FAIL | ERROR | OK |
|---|---|---|---|
| DoseFinding | 1 | 1 | 11 |
Current CRAN status: FAIL: 1, ERROR: 1, OK: 11
Version: 1.1-1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘RBesT’
Flavor: r-patched-linux-x86_64
Version: 1.1-1
Check: examples
Result: ERROR
Running examples in ‘DoseFinding-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bMCTtest
> ### Title: Performs Bayesian multiple contrast test
> ### Aliases: bMCTtest
>
> ### ** Examples
>
>
> require(RBesT)
Loading required package: RBesT
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘RBesT’
>
> ###############################
> ## Normal outcome
> ###############################
>
> data(biom)
> ## define shapes for which to calculate optimal contrasts
> doses <- c(0, 0.05, 0.2, 0.6, 1)
> modlist <- Mods(emax = 0.05, linear = NULL, logistic = c(0.5, 0.1),
+ linInt = c(0, 1, 1, 1), doses = doses)
> ## specify an informative prior for placebo, weakly informative for other arms
> plc_prior <- mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))
Error in mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) :
could not find function "mixnorm"
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1-1
Check: tests
Result: ERROR
Running ‘testgFit.R’ [2s/3s]
Running ‘testplanMod.R’ [0s/0s]
Running ‘testsDesign.R’ [5s/5s]
Running ‘testsFitting.R’ [2s/3s]
Running ‘testsMCPMod.R’ [4s/4s]
Running ‘testsMCT.R’ [5s/6s]
Running ‘testsoptContr.R’ [2s/2s]
Running ‘testsplotDRMod.R’ [0s/0s]
Running ‘testssampSize.R’ [0s/0s]
Running ‘testssamplMod.R’ [4s/4s]
Running ‘testthat.R’ [22s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ## Note: Files in this directory are old test cases that accumulated
> ## historically over time, many of them commented out for time reasons
> ## (and unorganized due to lack of anything close to testthat at the
> ## time of creation). The testthat sub-directory now contains a
> ## selected subset of these tests (with some additions) that have been
> ## brought in the testthat format.
> library(testthat)
> library(DoseFinding)
Loading required package: ggplot2
Loading required package: lattice
Loading required package: mvtnorm
> options(testthat.progress.max_fails = 100)
>
> Sys.unsetenv("R_TESTS")
> test_check("DoseFinding")
Running simulations
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[ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (2): 'test-optContr.R:81:3', 'test-planMod.R:27:3'
• RBesT package not available (10): 'test-bMCTtest.R:57:3',
'test-bMCTtest.R:81:3', 'test-bMCTtest.R:103:3', 'test-bMCTtest.R:125:3',
'test-bMCTtest.R:147:3', 'test-bMCTtest.R:169:3', 'test-bMCTtest.R:189:3',
'test-bMCTtest.R:213:3', 'test-bMCTtest.R:228:3', 'test-bMCTtest.R:244:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bMCTtest.R:266:3'): Error message for incorrect prior arguments ──
Error in `mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))`: could not find function "mixnorm"
[ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1-1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'analysis_normal.Rmd' using rmarkdown
--- finished re-building 'analysis_normal.Rmd'
--- re-building 'binary_data.Rmd' using rmarkdown
Warning in system(command) :
'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe +RTS -K512m -RTS binary_data.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc1e0706ad2664.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --highlight-style
Error: processing vignette 'binary_data.Rmd' failed with diagnostics:
pandoc document conversion failed with error 127
--- failed re-building 'binary_data.Rmd'
--- re-building 'faq.Rmd' using rmarkdown
Error: processing vignette 'faq.Rmd' failed with diagnostics:
'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe --version'
--- failed re-building 'faq.Rmd'
--- re-building 'mult_regimen.Rmd' using rmarkdown
--- finished re-building 'mult_regimen.Rmd'
--- re-building 'overview.Rmd' using rmarkdown
--- finished re-building 'overview.Rmd'
--- re-building 'sample_size.Rmd' using rmarkdown
Quitting from lines 184-190 [tdci93] (sample_size.Rmd)
Error: processing vignette 'sample_size.Rmd' failed with diagnostics:
cannot allocate vector of size 1 Kb
--- failed re-building 'sample_size.Rmd'
SUMMARY: processing the following files failed:
'binary_data.Rmd' 'faq.Rmd' 'sample_size.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1-1
Check: PDF version of manual
Result: WARN
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Flavor: r-release-windows-x86_64
Version: 1.1-1
Check: PDF version of manual without index
Result: ERROR
Re-running with no redirection of stdout/stderr.
Flavor: r-release-windows-x86_64
Version: 1.1-1
Check: HTML version of manual
Result: FAIL
Flavor: r-release-windows-x86_64