Last updated on 2025-09-12 01:53:13 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| pastclim | 13 | ||
| tidypopgen | 1 | 3 | 9 |
| tidysdm | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [175s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'admixtools', 'LEA'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.2
Check: installed package size
Result: NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
doc 1.2Mb
libs 5.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'admixtools'
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13