Last updated on 2024-06-14 01:51:59 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| AER | 1 | 12 | ||
| betareg | 2 | 11 | ||
| colorspace | 2 | 11 | ||
| ctv | 13 | |||
| dynlm | 1 | 12 | ||
| exams | 1 | 12 | ||
| exams2learnr | 13 | |||
| Formula | 13 | |||
| fortunes | 13 | |||
| fxregime | 1 | 12 | ||
| glmx | 2 | 11 | ||
| glogis | 1 | 12 | ||
| ineq | 13 | |||
| ivreg | 1 | 12 | ||
| lagsarlmtree | 8 | 5 | ||
| lmtest | 2 | 11 | ||
| pixmap | 13 | |||
| psychotools | 1 | 12 | ||
| psychotree | 13 | |||
| pwt | 8 | 5 | ||
| pwt10 | 13 | |||
| pwt8 | 13 | |||
| pwt9 | 13 | |||
| sandwich | 1 | 10 | 2 | |
| stablelearner | 2 | 11 | ||
| strucchange | 13 | |||
| tth | 13 | |||
| zoo | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.2-12
Check: package dependencies
Result: ERROR
Package required but not available: ‘car’
Packages suggested but not available for checking:
'dynlm', 'effects', 'forecast', 'mlogit', 'rugarch',
'sampleSelection', 'systemfit'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 3.1-4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘car’
Flavors: r-devel-linux-x86_64-debian-gcc, r-oldrel-macos-x86_64
Version: 3.1-4
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘betareg.Rnw’ due to unavailable dependencies: 'car'
Flavors: r-devel-linux-x86_64-debian-gcc, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 2.1-0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ggplot2', 'dplyr', 'rcartocolor', 'viridis'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1-0
Check: examples
Result: ERROR
Running examples in ‘colorspace-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scale_colour_binned_diverging
> ### Title: HCL-Based Binned Diverging Color Scales for ggplot2
> ### Aliases: scale_colour_binned_diverging scale_color_binned_diverging
> ### scale_fill_binned_diverging
>
> ### ** Examples
>
> # adapted from stackoverflow: https://stackoverflow.com/a/20127706/4975218
>
> library("ggplot2")
Error in library("ggplot2") : there is no package called ‘ggplot2’
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1-0
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘colorspace.Rmd’ due to unavailable dependencies: 'ggplot2'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1-0
Check: examples
Result: ERROR
Running examples in ‘colorspace-Ex.R’ failed
The error most likely occurred in:
> ### Name: scale_colour_binned_diverging
> ### Title: HCL-Based Binned Diverging Color Scales for ggplot2
> ### Aliases: scale_colour_binned_diverging scale_color_binned_diverging
> ### scale_fill_binned_diverging
>
> ### ** Examples
>
> # adapted from stackoverflow: https://stackoverflow.com/a/20127706/4975218
>
> library("ggplot2")
>
> # generate dataset and base plot
> set.seed(100)
> df <- data.frame(country = LETTERS, V = runif(26, -40, 40))
> df$country = factor(LETTERS, LETTERS[order(df$V)]) # reorder factors
> gg <- ggplot(df, aes(x = country, y = V, fill = V)) +
+ geom_bar(stat = "identity") +
+ labs(y = "Under/over valuation in %", x = "Country") +
+ coord_flip() + theme_minimal()
>
> # plot with default diverging scale
> gg + scale_fill_binned_diverging(n.breaks = 6)
Error in loadNamespace(x) : there is no package called ‘farver’
Calls: scale_fill_binned_diverging ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.3-6
Check: package dependencies
Result: ERROR
Package required but not available: ‘car’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 1, OK: 12
Version: 2.4-0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘magick’
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0-4
Flags: --no-vignettes
Check: package dependencies
Result: ERROR
Package required but not available: ‘car’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 0.2-0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘AER’
Flavors: r-devel-linux-x86_64-debian-gcc, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.0-2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘fxregime’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0-2
Check: dependencies in R code
Result: NOTE
Unavailable namespace imported from by a ':::' call: ‘fxregime’
See the note in ?`:::` about the use of this operator.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.6-3
Check: package dependencies
Result: ERROR
Package required but not available: ‘car’
Packages suggested but not available for checking:
'AER', 'effects', 'testthat', 'gt', 'ggplot2'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 8, OK: 5
Version: 1.0-1
Check: installed package size
Result: NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
data 8.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0-1
Check: Rd cross-references
Result: NOTE
Undeclared package ‘spdep’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: NOTE: 2, OK: 11
Version: 0.9-40
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'car', 'dynlm', 'AER'
Flavors: r-devel-linux-x86_64-debian-gcc, r-oldrel-macos-x86_64
Version: 0.9-40
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘car’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 0.7-4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘likert’
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 7.1-1
Check: installed package size
Result: NOTE
installed size is 7.3Mb
sub-directories of 1Mb or more:
data 7.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: WARN: 1, NOTE: 10, OK: 2
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [16s/19s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [3s/4s] OK
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.1-0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'AER', 'car', 'geepack', 'lme4'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1-0
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘sandwich-OOP.Rnw’
...
> options(prompt = "R> ", continue = "+ ")
> if (!require("AER")) tobit <- glm
Loading required package: AER
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘AER’
> if (!require("MASS")) glm.nb <- glm
Loading required package: MASS
> if (!require("lmtest")) coeftest <- function(object,
+ ...) summary(object)$coefficients
Loading required package: lmtest
Loading required package: zoo
Attaching package: ‘zoo’
The following objects are masked from ‘package:base’:
as.Date, as.Date.numeric
> warn <- if (require("AER") & require("MASS") & require("lmtest")) "" else "{\\\\large\\\\bf\\\\color{Red}\n Not all required packages were availab ..." ... [TRUNCATED]
Loading required package: AER
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘AER’
> par(mar = rep(0, 4))
> plot(0, 0, xlim = c(0, 85), ylim = c(0, 110), type = "n",
+ axes = FALSE, xlab = "", ylab = "")
> lgrey <- grey(0.88)
> dgrey <- grey(0.75)
> rect(45, 90, 70, 110, lwd = 2, col = dgrey)
> rect(20, 40, 40, 60, col = lgrey)
> rect(30, 40, 40, 60, col = dgrey)
> rect(20, 40, 40, 60, lwd = 2)
> rect(5, 0, 20, 20, lwd = 2, col = lgrey)
> rect(22.5, 0, 37.5, 20, lwd = 2, col = lgrey)
> rect(40, 0, 55, 20, lwd = 2, col = lgrey)
> rect(40, 0, 55, 20, lwd = 2, col = lgrey)
> rect(60, 0, 80, 20, col = lgrey)
> rect(70, 0, 80, 20, col = dgrey)
> rect(60, 0, 80, 20, lwd = 2)
> text(57.5, 100, "fitted model object\n(class: foo)")
> text(25, 50, "estfun")
> text(35, 50, "foo")
> text(12.5, 10, "meatHC")
> text(30, 10, "meatHAC")
> text(47.5, 10, "meat")
> text(65, 10, "bread")
> text(75, 10, "foo")
> arrows(57.5, 89, 70, 21, lwd = 1.5, length = 0.15,
+ angle = 20)
> arrows(57.5, 89, 30, 61, lwd = 1.5, length = 0.15,
+ angle = 20)
> arrows(30, 39, 30, 21, lwd = 1.5, length = 0.15, angle = 20)
> arrows(30, 39, 12.5, 21, lwd = 1.5, length = 0.15,
+ angle = 20)
> arrows(30, 39, 47.5, 21, lwd = 1.5, length = 0.15,
+ angle = 20)
> suppressWarnings(RNGversion("3.5.0"))
> set.seed(123)
> x <- rnorm(250)
> y <- rnbinom(250, mu = exp(1 + x), size = 1)
> fm_pois <- glm(y ~ x + I(x^2), family = poisson)
> coeftest(fm_pois)
z test of coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 1.063268 0.041357 25.7094 < 2e-16 ***
x 0.996072 0.053534 18.6062 < 2e-16 ***
I(x^2) -0.049124 0.023146 -2.1223 0.03381 *
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
> coeftest(fm_pois, vcov = sandwich)
When sourcing ‘sandwich-OOP.R’:
Error: object 'sandwich' not found
Execution halted
‘sandwich-CL.Rnw’... [8s/11s] NOTE
differences from ‘sandwich-CL.Rout.save’
26,27d25
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
< there is no package called 'geepack'
40,41d37
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
< there is no package called 'lme4'
86c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
89,91c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
154,155c150,151
< (Intercept) 0.066939 0.066939 0.028359
< x 0.050540 0.050540 0.028583
---
> (Intercept) 0.066939 0.066939 0.066939
> x 0.050540 0.050540 0.050540
‘sandwich-OOP.Rnw’... failed
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1-0
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘sandwich-CL.Rnw’ due to unavailable dependencies: 'geepack'
Note: skipping ‘sandwich-OOP.Rnw’ due to unavailable dependencies: 'AER'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [20s/27s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... OK
‘sandwich.Rnw’... OK
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [18s/22s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... OK
‘sandwich.Rnw’... OK
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
'sandwich-CL.Rnw'... [11s] NOTE
differences from 'sandwich-CL.Rout.save'
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
'sandwich-OOP.Rnw'... [2s] OK
'sandwich.Rnw'... [1s] OK
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [14s/19s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [3s/3s] OK
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-patched-linux-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [15s/21s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [3s/3s] OK
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-release-linux-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [5s/6s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [1s/1s] OK
‘sandwich.Rnw’... [1s/1s] OK
Flavor: r-release-macos-arm64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [10s/12s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [2s/2s] OK
‘sandwich.Rnw’... [1s/1s] OK
Flavor: r-release-macos-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
'sandwich-CL.Rnw'... [13s] NOTE
differences from 'sandwich-CL.Rout.save'
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
'sandwich-OOP.Rnw'... [3s] OK
'sandwich.Rnw'... [1s] OK
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1-5
Check: data for non-ASCII characters
Result: NOTE
Note: found 123 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 13
Version: 1.5-3
Check: R code for possible problems
Result: NOTE
efpFunctional: multiple local function definitions for ‘plotProcess’
with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
different formal arguments
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.5-3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'car', 'dynlm'
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.8-12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'AER', 'ggplot2'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.8-12
Check: tests
Result: ERROR
Running ‘as.Date.R’ [1s/1s]
Comparing ‘as.Date.Rout’ to ‘as.Date.Rout.save’ ... OK
Running ‘bugfixes.R’ [0s/0s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ... OK
Running ‘na.fill.R’ [0s/0s]
Comparing ‘na.fill.Rout’ to ‘na.fill.Rout.save’ ... OK
Running ‘na.locf.R’ [0s/0s]
Comparing ‘na.locf.Rout’ to ‘na.locf.Rout.save’ ... OK
Running ‘vignette-zoo-quickref.R’ [1s/1s]
Comparing ‘vignette-zoo-quickref.Rout’ to ‘vignette-zoo-quickref.Rout.save’ ... OK
Running ‘vignette-zoo.R’ [1s/1s]
Running the tests in ‘tests/vignette-zoo.R’ failed.
Complete output:
> ###################################################
> ### chunk number 1: preliminaries
> ###################################################
> library("zoo")
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
> library("tseries")
> library("strucchange")
Loading required package: sandwich
> library("timeDate")
> online <- FALSE ## if set to FALSE the local copy of MSFT.rda
> ## is used instead of get.hist.quote()
> options(prompt = "R> ")
R> Sys.setenv(TZ = "GMT")
R> suppressWarnings(RNGversion("3.5.0"))
R>
R>
R> ###################################################
R> ### chunk number 2: zoo-prelim
R> ###################################################
R> library("zoo")
R> set.seed(1071)
R>
R>
R> ###################################################
R> ### chunk number 3: zoo-vectors1
R> ###################################################
R> z1.index <- ISOdatetime(2004, rep(1:2,5), sample(28,10), 0, 0, 0)
R> z1.data <- rnorm(10)
R> z1 <- zoo(z1.data, z1.index)
R>
R>
R> ###################################################
R> ### chunk number 4: zoo-vectors2
R> ###################################################
R> z2.index <- as.POSIXct(paste(2004, rep(1:2, 5), sample(1:28, 10), sep = "-"))
R> z2.data <- sin(2*1:10/pi)
R> z2 <- zoo(z2.data, z2.index)
R>
R>
R> ###################################################
R> ### chunk number 5: zoo-matrix
R> ###################################################
R> Z.index <- as.Date(sample(12450:12500, 10))
R> Z.data <- matrix(rnorm(30), ncol = 3)
R> colnames(Z.data) <- c("Aa", "Bb", "Cc")
R> Z <- zoo(Z.data, Z.index)
R>
R>
R> ###################################################
R> ### chunk number 6: print1
R> ###################################################
R> z1
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07
0.74675994 0.02107873 -0.29823529 0.68625772 1.94078850 1.27384445
2004-02-12 2004-02-16 2004-02-20 2004-02-24
0.22170438 -2.07607585 -1.78439244 -0.19533304
R> z1[3:7]
2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
-0.2982353 0.6862577 1.9407885 1.2738445 0.2217044
R>
R>
R> ###################################################
R> ### chunk number 7: print2
R> ###################################################
R> Z
Aa Bb Cc
2004-02-02 1.2554339 0.6815732 -0.63292049
2004-02-08 -1.4945833 1.3234122 -1.49442269
2004-02-09 -1.8746225 -0.8732929 0.62733971
2004-02-21 -0.1453861 0.4523490 -0.14597401
2004-02-22 0.2254242 0.5383894 0.23136133
2004-02-29 1.2069552 0.3181422 -0.01129202
2004-03-05 -1.2086102 1.4237978 -0.81614483
2004-03-10 -0.1103956 1.3477425 0.95522468
2004-03-14 0.8420238 -2.7384202 0.23150695
2004-03-20 -0.1901910 0.1230887 -1.51862157
R> Z[1:3, 2:3]
Bb Cc
2004-02-02 0.6815732 -0.6329205
2004-02-08 1.3234122 -1.4944227
2004-02-09 -0.8732929 0.6273397
R>
R>
R> ###################################################
R> ### chunk number 8: subset
R> ###################################################
R> z1[ISOdatetime(2004, 1, c(14, 25), 0, 0, 0)]
2004-01-14 2004-01-25
0.02107873 0.68625772
R>
R>
R> ###################################################
R> ### chunk number 9: summary
R> ###################################################
R> summary(z1)
Index z1
Min. :2004-01-05 00:00:00 Min. :-2.07608
1st Qu.:2004-01-20 12:00:00 1st Qu.:-0.27251
Median :2004-02-01 12:00:00 Median : 0.12139
Mean :2004-02-01 09:36:00 Mean : 0.05364
3rd Qu.:2004-02-15 00:00:00 3rd Qu.: 0.73163
Max. :2004-02-24 00:00:00 Max. : 1.94079
R> summary(Z)
Index Aa Bb Cc
Min. :2004-02-02 Min. :-1.8746 Min. :-2.7384 Min. :-1.51862
1st Qu.:2004-02-12 1st Qu.:-0.9540 1st Qu.: 0.1719 1st Qu.:-0.77034
Median :2004-02-25 Median :-0.1279 Median : 0.4954 Median :-0.07863
Mean :2004-02-25 Mean :-0.1494 Mean : 0.2597 Mean :-0.25739
3rd Qu.:2004-03-08 3rd Qu.: 0.6879 3rd Qu.: 1.1630 3rd Qu.: 0.23147
Max. :2004-03-20 Max. : 1.2554 Max. : 1.4238 Max. : 0.95522
R>
R>
R> ###################################################
R> ### chunk number 10: zooreg1
R> ###################################################
R> zr1 <- zooreg(sin(1:9), start = 2000, frequency = 4)
R> zr2 <- zoo(sin(1:9), seq(2000, 2002, by = 1/4), 4)
R> zr1
2000 Q1 2000 Q2 2000 Q3 2000 Q4 2001 Q1 2001 Q2 2001 Q3
0.8414710 0.9092974 0.1411200 -0.7568025 -0.9589243 -0.2794155 0.6569866
2001 Q4 2002 Q1
0.9893582 0.4121185
R> zr2
2000 Q1 2000 Q2 2000 Q3 2000 Q4 2001 Q1 2001 Q2 2001 Q3
0.8414710 0.9092974 0.1411200 -0.7568025 -0.9589243 -0.2794155 0.6569866
2001 Q4 2002 Q1
0.9893582 0.4121185
R>
R>
R> ###################################################
R> ### chunk number 11: zooreg2
R> ###################################################
R> zr1 <- zr1[-c(3, 5)]
R> zr1
2000 Q1 2000 Q2 2000 Q4 2001 Q2 2001 Q3 2001 Q4 2002 Q1
0.8414710 0.9092974 -0.7568025 -0.2794155 0.6569866 0.9893582 0.4121185
R> class(zr1)
[1] "zooreg" "zoo"
R> frequency(zr1)
[1] 4
R>
R>
R> ###################################################
R> ### chunk number 12: zooreg1b
R> ###################################################
R> zooreg(1:5, start = as.Date("2005-01-01"))
2005-01-01 2005-01-02 2005-01-03 2005-01-04 2005-01-05
1 2 3 4 5
R>
R>
R> ###################################################
R> ### chunk number 13: zooreg3
R> ###################################################
R> is.regular(zr1)
[1] TRUE
R> is.regular(zr1, strict = TRUE)
[1] FALSE
R>
R>
R> ###################################################
R> ### chunk number 14: zooreg4
R> ###################################################
R> zr1 <- as.zoo(zr1)
R> zr1
2000 Q1 2000 Q2 2000 Q4 2001 Q2 2001 Q3 2001 Q4 2002 Q1
0.8414710 0.9092974 -0.7568025 -0.2794155 0.6569866 0.9893582 0.4121185
R> class(zr1)
[1] "zoo"
R> is.regular(zr1)
[1] TRUE
R> frequency(zr1)
[1] 4
R>
R>
R> ###################################################
R> ### chunk number 15: zooreg5
R> ###################################################
R> as.ts(zr1)
Qtr1 Qtr2 Qtr3 Qtr4
2000 0.8414710 0.9092974 NA -0.7568025
2001 NA -0.2794155 0.6569866 0.9893582
2002 0.4121185
R> identical(zr2, as.zoo(as.ts(zr2)))
[1] TRUE
R>
R>
R> ###################################################
R> ### chunk number 16: plot1 eval=FALSE
R> ###################################################
R> ## plot(Z)
R>
R>
R> ###################################################
R> ### chunk number 17: plot2 eval=FALSE
R> ###################################################
R> ## plot(Z, plot.type = "single", col = 2:4)
R>
R>
R> ###################################################
R> ### chunk number 18: plot2-repeat
R> ###################################################
R> plot(Z, plot.type = "single", col = 2:4)
R>
R>
R> ###################################################
R> ### chunk number 19: plot1-repeat
R> ###################################################
R> plot(Z)
R>
R>
R> ###################################################
R> ### chunk number 20: plot3
R> ###################################################
R> plot(Z, type = "b", lty = 1:3, pch = list(Aa = 1:5, Bb = 2, Cc = 4), col = list(Bb = 2, 4))
R>
R>
R> ###################################################
R> ### chunk number 21: plot3-repeat eval=FALSE
R> ###################################################
R> ## plot(Z, type = "b", lty = 1:3, pch = list(Aa = 1:5, Bb = 2, Cc = 4), col = list(Bb = 2, 4))
R>
R>
R> ###################################################
R> ### chunk number 22: rbind
R> ###################################################
R> rbind(z1[5:10], z1[2:3])
2004-01-14 2004-01-19 2004-01-27 2004-02-07 2004-02-12 2004-02-16
0.02107873 -0.29823529 1.94078850 1.27384445 0.22170438 -2.07607585
2004-02-20 2004-02-24
-1.78439244 -0.19533304
R>
R>
R> ###################################################
R> ### chunk number 23: cbind
R> ###################################################
R> cbind(z1, z2)
z1 z2
2004-01-03 NA 0.94306673
2004-01-05 0.74675994 -0.04149429
2004-01-14 0.02107873 NA
2004-01-17 NA 0.59448077
2004-01-19 -0.29823529 -0.52575918
2004-01-24 NA -0.96739776
2004-01-25 0.68625772 NA
2004-01-27 1.94078850 NA
2004-02-07 1.27384445 NA
2004-02-08 NA 0.95605566
2004-02-12 0.22170438 -0.62733473
2004-02-13 NA -0.92845336
2004-02-16 -2.07607585 NA
2004-02-20 -1.78439244 NA
2004-02-24 -0.19533304 NA
2004-02-25 NA 0.56060280
2004-02-26 NA 0.08291711
R>
R>
R> ###################################################
R> ### chunk number 24: merge
R> ###################################################
R> merge(z1, z2, all = FALSE)
z1 z2
2004-01-05 0.7467599 -0.04149429
2004-01-19 -0.2982353 -0.52575918
2004-02-12 0.2217044 -0.62733473
R>
R>
R> ###################################################
R> ### chunk number 25: merge2
R> ###################################################
R> merge(z1, pi, 1:10)
z1 pi 1:10
2004-01-05 0.74675994 3.141593 1
2004-01-14 0.02107873 3.141593 2
2004-01-19 -0.29823529 3.141593 3
2004-01-25 0.68625772 3.141593 4
2004-01-27 1.94078850 3.141593 5
2004-02-07 1.27384445 3.141593 6
2004-02-12 0.22170438 3.141593 7
2004-02-16 -2.07607585 3.141593 8
2004-02-20 -1.78439244 3.141593 9
2004-02-24 -0.19533304 3.141593 10
R>
R>
R> ###################################################
R> ### chunk number 26: aggregate
R> ###################################################
R> firstofmonth <- function(x) as.Date(sub("..$", "01", format(x)))
R> aggregate(Z, firstofmonth(index(Z)), mean)
Aa Bb Cc
2004-02-01 -0.1377964 0.40676219 -0.2376514
2004-03-01 -0.1667933 0.03905223 -0.2870087
R> aggregate(Z, firstofmonth, head, 1)
Aa Bb Cc
2004-02-01 1.255434 0.6815732 -0.6329205
2004-03-01 -1.208610 1.4237978 -0.8161448
R>
R>
R> ###################################################
R> ### chunk number 27: disaggregate
R> ###################################################
R> Nile.na <- merge(as.zoo(Nile), zoo(, seq(start(Nile)[1], end(Nile)[1], 1/4)))
R> head(as.zoo(Nile))
1871 1872 1873 1874 1875 1876
1120 1160 963 1210 1160 1160
R> head(na.approx(Nile.na))
1871(1) 1871(2) 1871(3) 1871(4) 1872(1) 1872(2)
1120.00 1130.00 1140.00 1150.00 1160.00 1110.75
R> head(na.locf(Nile.na))
1871(1) 1871(2) 1871(3) 1871(4) 1872(1) 1872(2)
1120 1120 1120 1120 1160 1160
R> head(na.spline(Nile.na))
1871(1) 1871(2) 1871(3) 1871(4) 1872(1) 1872(2)
1120.000 1199.059 1224.985 1208.419 1160.000 1091.970
R>
R>
R> ###################################################
R> ### chunk number 28: Ops
R> ###################################################
R> z1 + z2
2004-01-05 2004-01-19 2004-02-12
0.7052657 -0.8239945 -0.4056304
R> z1 < z2
2004-01-05 2004-01-19 2004-02-12
FALSE FALSE FALSE
R>
R>
R> ###################################################
R> ### chunk number 29: cumsum
R> ###################################################
R> cumsum(Z)
Aa Bb Cc
2004-02-02 1.2554339 0.6815732 -0.6329205
2004-02-08 -0.2391494 2.0049854 -2.1273432
2004-02-09 -2.1137718 1.1316925 -1.5000035
2004-02-21 -2.2591579 1.5840415 -1.6459775
2004-02-22 -2.0337337 2.1224309 -1.4146162
2004-02-29 -0.8267785 2.4405731 -1.4259082
2004-03-05 -2.0353888 3.8643710 -2.2420530
2004-03-10 -2.1457844 5.2121135 -1.2868283
2004-03-14 -1.3037606 2.4736933 -1.0553214
2004-03-20 -1.4939516 2.5967820 -2.5739429
R>
R>
R> ###################################################
R> ### chunk number 30: coredata
R> ###################################################
R> coredata(z1)
[1] 0.74675994 0.02107873 -0.29823529 0.68625772 1.94078850 1.27384445
[7] 0.22170438 -2.07607585 -1.78439244 -0.19533304
R> coredata(z1) <- 1:10
R> z1
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
1 2 3 4 5 6 7
2004-02-16 2004-02-20 2004-02-24
8 9 10
R>
R>
R> ###################################################
R> ### chunk number 31: index
R> ###################################################
R> index(z2)
[1] "2004-01-03 GMT" "2004-01-05 GMT" "2004-01-17 GMT" "2004-01-19 GMT"
[5] "2004-01-24 GMT" "2004-02-08 GMT" "2004-02-12 GMT" "2004-02-13 GMT"
[9] "2004-02-25 GMT" "2004-02-26 GMT"
R>
R>
R> ###################################################
R> ### chunk number 32: index2
R> ###################################################
R> index(z2) <- index(z1)
R> z2
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07
0.94306673 -0.04149429 0.59448077 -0.52575918 -0.96739776 0.95605566
2004-02-12 2004-02-16 2004-02-20 2004-02-24
-0.62733473 -0.92845336 0.56060280 0.08291711
R>
R>
R> ###################################################
R> ### chunk number 33: startend
R> ###################################################
R> start(z1)
[1] "2004-01-05 GMT"
R> end(z1)
[1] "2004-02-24 GMT"
R>
R>
R> ###################################################
R> ### chunk number 34: window
R> ###################################################
R> window(Z, start = as.Date("2004-03-01"))
Aa Bb Cc
2004-03-05 -1.2086102 1.4237978 -0.8161448
2004-03-10 -0.1103956 1.3477425 0.9552247
2004-03-14 0.8420238 -2.7384202 0.2315069
2004-03-20 -0.1901910 0.1230887 -1.5186216
R> window(Z, index = index(Z)[5:8], end = as.Date("2004-03-01"))
Aa Bb Cc
2004-02-22 0.2254242 0.5383894 0.23136133
2004-02-29 1.2069552 0.3181422 -0.01129202
R>
R>
R> ###################################################
R> ### chunk number 35: window2
R> ###################################################
R> window(z1, end = as.POSIXct("2004-02-01")) <- 9:5
R> z1
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
9 8 7 6 5 6 7
2004-02-16 2004-02-20 2004-02-24
8 9 10
R>
R>
R> ###################################################
R> ### chunk number 36: lagdiff
R> ###################################################
R> lag(z1, k = -1)
2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12 2004-02-16
9 8 7 6 5 6 7
2004-02-20 2004-02-24
8 9
R> merge(z1, lag(z1, k = 1))
z1 lag(z1, k = 1)
2004-01-05 9 8
2004-01-14 8 7
2004-01-19 7 6
2004-01-25 6 5
2004-01-27 5 6
2004-02-07 6 7
2004-02-12 7 8
2004-02-16 8 9
2004-02-20 9 10
2004-02-24 10 NA
R> diff(z1)
2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12 2004-02-16
-1 -1 -1 -1 1 1 1
2004-02-20 2004-02-24
1 1
R>
R>
R> ###################################################
R> ### chunk number 37: coercion
R> ###################################################
R> as.data.frame(Z)
Aa Bb Cc
2004-02-02 1.2554339 0.6815732 -0.63292049
2004-02-08 -1.4945833 1.3234122 -1.49442269
2004-02-09 -1.8746225 -0.8732929 0.62733971
2004-02-21 -0.1453861 0.4523490 -0.14597401
2004-02-22 0.2254242 0.5383894 0.23136133
2004-02-29 1.2069552 0.3181422 -0.01129202
2004-03-05 -1.2086102 1.4237978 -0.81614483
2004-03-10 -0.1103956 1.3477425 0.95522468
2004-03-14 0.8420238 -2.7384202 0.23150695
2004-03-20 -0.1901910 0.1230887 -1.51862157
R>
R>
R> ###################################################
R> ### chunk number 38: na
R> ###################################################
R> z1[sample(1:10, 3)] <- NA
R> z1
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
9 NA 7 6 5 6 NA
2004-02-16 2004-02-20 2004-02-24
8 9 NA
R> na.omit(z1)
2004-01-05 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-16 2004-02-20
9 7 6 5 6 8 9
R> na.contiguous(z1)
2004-01-19 2004-01-25 2004-01-27 2004-02-07
7 6 5 6
R> na.approx(z1)
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
9.000000 7.714286 7.000000 6.000000 5.000000 6.000000 7.111111
2004-02-16 2004-02-20
8.000000 9.000000
R> na.approx(z1, 1:NROW(z1))
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
9 8 7 6 5 6 7
2004-02-16 2004-02-20
8 9
R> na.locf(z1)
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27 2004-02-07 2004-02-12
9 9 7 6 5 6 6
2004-02-16 2004-02-20 2004-02-24
8 9 9
R>
R>
R> ###################################################
R> ### chunk number 39: rollapply
R> ###################################################
R> rollapply(Z, 5, sd)
Aa Bb Cc
2004-02-09 1.2814876 0.8018950 0.8218959
2004-02-21 1.2658555 0.7891358 0.8025043
2004-02-22 1.2102011 0.8206819 0.5319727
2004-02-29 0.8662296 0.5266261 0.6411751
2004-03-05 0.9363400 1.7011273 0.6356144
2004-03-10 0.9508642 1.6892246 0.9578196
R> rollapply(Z, 5, sd, fill = NA, align = "left")
Aa Bb Cc
2004-02-02 1.2814876 0.8018950 0.8218959
2004-02-08 1.2658555 0.7891358 0.8025043
2004-02-09 1.2102011 0.8206819 0.5319727
2004-02-21 0.8662296 0.5266261 0.6411751
2004-02-22 0.9363400 1.7011273 0.6356144
2004-02-29 0.9508642 1.6892246 0.9578196
2004-03-05 NA NA NA
2004-03-10 NA NA NA
2004-03-14 NA NA NA
2004-03-20 NA NA NA
R>
R>
R> ###################################################
R> ### chunk number 40: rollmean
R> ###################################################
R> rollmean(z2, 5, fill = NA)
2004-01-05 2004-01-14 2004-01-19 2004-01-25 2004-01-27
NA NA 0.0005792538 0.0031770388 -0.1139910497
2004-02-07 2004-02-12 2004-02-16 2004-02-20 2004-02-24
-0.4185778750 -0.2013054791 0.0087574946 NA NA
R>
R>
R> ###################################################
R> ### chunk number 41: strucchange1
R> ###################################################
R> library("strucchange")
R> data("Journals", package = "AER")
Error in find.package(package, lib.loc, verbose = verbose) :
there is no package called 'AER'
Calls: data -> find.package
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.8-12
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘zoo.Rnw’ due to unavailable dependencies: 'AER'
Flavor: r-devel-linux-x86_64-debian-gcc