0ff9cfc471d4a8a72c9379d3ecde7c14 *DESCRIPTION
b34a12db9a7d33331b9a153628e129dd *LICENSE
7a682ff83b437b4520a28958cf554211 *NAMESPACE
9064183dc0d352e15febe0d3172140f7 *NEWS.md
2f936dbca7706b09a72656006029782f *R/RcppExports.R
83372511494184c9b89b6cfdc9f9c272 *R/approximate_memory_requirements.R
d98e36f7d6f2df50ca616e0e8e0aff8c *R/catch-routine-registration.R
0e136dc51d0a58a9e6e8a84d78c6216f *R/getting_started.R
2b21b8095a0731ef2933367dea5ffcac *R/hdf5_api.R
48d66455b1d4057356eb4de9d497506c *R/simulate_traits.R
a9f0d15557e8ce294386905fadd8b6b7 *R/sme.R
81fab9b5b46a145ca0706063a4eabdbc *README.md
b72f8ed087a0a4ffe2a9ed21149afd7e *build/vignette.rds
821c927be0a084fca7650dacd3174590 *data/getting_started.rda
c6e7275972a1391f289b027afdc01740 *inst/doc/smer.R
90b3af8b272923e38fa2f56817ac6eda *inst/doc/smer.Rmd
807986bdd5bb3ceeae05f830e5c34a33 *inst/doc/smer.html
c9eee73f33dcbb032ac1fe55f34a2f23 *inst/doc/study-erythroid-differentiation-data.R
79fbcdbdfdea4c5d14363a4954ccfef7 *inst/doc/study-erythroid-differentiation-data.Rmd
dafab17cd133d420138614372371f4c1 *inst/doc/study-erythroid-differentiation-data.html
5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/tutorial-cite-us.R
21c0f43efcfcf72b8421e578323bfbcd *inst/doc/tutorial-cite-us.Rmd
1bc90589870d5af59b4f982e36ab5543 *inst/doc/tutorial-cite-us.html
beaf75bf93b5606519045e37e6ef73e6 *inst/doc/tutorial-create-mask-file.R
e914e4b9835a73d02b894336ad00bd17 *inst/doc/tutorial-create-mask-file.Rmd
86a6746cd38babfdbd9f08e6e20aa098 *inst/doc/tutorial-create-mask-file.html
f1847e5bea3a620b15c7d51eaac9c5c3 *inst/doc/tutorial-memory-optimization.R
d02af68c38971732909d17d9d06ca9fe *inst/doc/tutorial-memory-optimization.Rmd
ded6e2e51def9fae08c8bcf12923790e *inst/doc/tutorial-memory-optimization.html
316ca29bb0e56b31d3a9158b69771051 *inst/doc/tutorial-simulate-traits.R
e35bc4f4b5afef5275f9fe022c066cca *inst/doc/tutorial-simulate-traits.Rmd
e038c76299a6a8b3eb07850adf534a3c *inst/doc/tutorial-simulate-traits.html
2942feb6de09d3322caa6a5be0846bc4 *inst/testdata/allele_count_matrix.txt
5239e24db19422ba4a9282afef27d227 *inst/testdata/test.bed
72905aa835283334df036fab8993d397 *inst/testdata/test.bim
ccb9e69fc4d1ff15a58cd5a4fbe02ceb *inst/testdata/test.cov
1c8df30d195fc0cdd9f977e1c4cf34fa *inst/testdata/test.csv
34cf3143bd5a86c866b6d9dbc83b5d4e *inst/testdata/test.fam
bfca381a47219355f8531793878f0d53 *inst/testdata/test.h5
f226091f4a088a19e0e3d621c5cd6e88 *inst/testdata/test_2.bed
b06321522bb9d21a30c666bc377c0c25 *inst/testdata/test_2.bim
34cf3143bd5a86c866b6d9dbc83b5d4e *inst/testdata/test_2.fam
451c4dbd621d2789cbddc559ce8e5e1e *inst/testdata/test_h2_0.5.pheno
ab088c293a1d24db40ec04d9f81fe41f *inst/testdata/test_ld.h5
e78d023044fa4a86c7c7a574d25671d7 *man/approximate_memory_requirements.Rd
86399f3879276eb0086b0d8a6ee782b9 *man/create_hdf5_file.Rd
75b8d28e2d55ff5eb258f50ba5146f59 *man/figures/README-logo.png
8396064115aa287f5180b4e493cc7b87 *man/figures/dhs_manhattan.png
75b8d28e2d55ff5eb258f50ba5146f59 *man/figures/logo.png
683d98da96d8d9e1f468a6beb8cb4345 *man/figures/sme-runtime.png
e46ae27bcead1a2f2fb971dadfafc765 *man/figures/sme-schematic-dhs.png
c7741a03513afb6a0c450028d6d3ebab *man/figures/sme-schematic-manhattan.png
7a2108b8d9e40e023a3cd5ff506b5c1d *man/figures/sme-shared-rvs.png
679b3e5fb4d0ed4ef340a779d3dab34b *man/getting_started.Rd
3bf693b89149289012ccbd956ec0155b *man/read_hdf5_dataset.Rd
c491149c37388d35a085b9b866f246c7 *man/simulate_traits.Rd
c273e9fdd8584e07e84989bbc002b479 *man/sme.Rd
0b909f3367ae48d4ae8f1ff9f76266d9 *man/write_hdf5_dataset.Rd
0b9419233d5e9340c5ee198ca87c8985 *src/Makevars
7d0fff7287c5ae4c4c449e2cd06e9483 *src/RcppExports.cpp
f00de3a7b3eb3d53f716c2150de48b27 *src/allocate_memory.cpp
46dd09893d92d7e5b1d596531f1b6897 *src/allocate_memory.h
be85829023106067be3482e33888ce56 *src/check_openmp.cpp
d64497118c8ae43a3422d1ea62d2a949 *src/computation.cpp
dd5d07a9852d617528cec17c17bce70d *src/computation.h
eb7d910fd3fd2a197c8a40a0cd0225fb *src/compute_covariance_q.cpp
ac67e750b775805229dd97e378f45d25 *src/compute_covariance_q.h
0badc7d23afaf3d856b1ea3e9f133bb3 *src/compute_mom_components.cpp
27fa2f8c0c13d23df7e63179a2eea871 *src/compute_mom_components.h
d68cc2a33ce81e5bc251f2134e2d2a53 *src/count_data.cpp
29e251297d8bb6e0f60457d7ddf6b366 *src/count_data.h
43529cce91cf616da74030d4887a7d8a *src/genotype.cpp
5b64dd26d29e7f1f6401107c1ecfc594 *src/genotype.h
64f91bb3ac51b37d080a4f8151b5e4e3 *src/hdf5_api.cpp
1da17a3aecf2fd32f043cd34e82d8f1c *src/initialize_random_vectors.cpp
4799de4a539d959a1a4957e1989d0138 *src/initialize_random_vectors.h
8beef2102f653ae5b07ce4711b40d95a *src/mailman.h
39f3b50199bdb1d8bfa1e29460d74211 *src/read_covariates.cpp
91329cbd4b36471dd14d0e2f3eabb0c5 *src/read_covariates.h
898f3a7302eecb3cae13321c5784ae0f *src/read_genotype_mask.cpp
514ceeb69b7113e2f133c09955b28ac6 *src/read_genotype_mask.h
ca5bdc40b37fc3316d35b2275c917c3e *src/read_genotypes.cpp
466a1f8c86aabc70a824d065c718850f *src/read_genotypes.h
f5bca2cb5aa07fed523c1049974945cd *src/read_phenotypes.cpp
c85891722e3dc3a55e0c7bd434b96f17 *src/read_phenotypes.h
9ff93cd192cdf449e9e4488cf433297e *src/set_metadata.cpp
6bf112603b9f0ce628bcd873dea7fea1 *src/set_metadata.h
27d1ca9b95c67324c60627ddc677f663 *src/simulate_traits.cpp
ea4b7c390fc64619624a20451ef23525 *src/simulate_traits.h
74b35d8f63ab06c5bd74dc4db5946ddd *src/sme.cpp
c57189c5b0df1bfbd286c703e8796eb0 *src/sme.h
c2cb0c30e10da611f9fbe56aea52f7a9 *src/test-runner.cpp
f0cf3d9fd0f613f867ef2c95dc9bd61c *src/testing_utils.cpp
4bbe9537f7563657c182e524d53e62df *src/testing_utils.h
b61bf585cf2e4e15bc1a185d22dc5213 *tests/testthat.R
42fafe26ec5603e535be681c7a70f40f *tests/testthat/test-hdf5_api.R
080d14015f919fb6021e678d1506fcb8 *tests/testthat/test-simulate_traits.R
b4d3a27bd03e475cde5705da530d4f05 *tests/testthat/test-sme.R
90b3af8b272923e38fa2f56817ac6eda *vignettes/smer.Rmd
79fbcdbdfdea4c5d14363a4954ccfef7 *vignettes/study-erythroid-differentiation-data.Rmd
21c0f43efcfcf72b8421e578323bfbcd *vignettes/tutorial-cite-us.Rmd
e914e4b9835a73d02b894336ad00bd17 *vignettes/tutorial-create-mask-file.Rmd
d02af68c38971732909d17d9d06ca9fe *vignettes/tutorial-memory-optimization.Rmd
e35bc4f4b5afef5275f9fe022c066cca *vignettes/tutorial-simulate-traits.Rmd
