3ab1cae28d529c787802650e2a88920f *DESCRIPTION
cef480b8494cb34bf8bc6a578c938972 *NAMESPACE
df2e7465d8cd8569ee37697977b1f623 *NEWS.md
160fa1309877b9a73ff067a41d24483c *R/conv_tri_dist.R
ccaf5a8df5abc0c1154d2f35d89eb110 *R/f0.R
5aed1e9a26f8f515b14f4f585a779ad8 *R/f_gam.R
9fa21118e12aa4b75c3ee7b260bb0e40 *R/f_norm.R
249296656fb7a338501eb097d84282c6 *R/flower.R
a80b0c41ded8b52548ef1a23eb837dd5 *R/fupper.R
17c499c0d9da661f7e7cae52cca89726 *R/generate_synthetic_epidemic.R
ba572d9194eb24d934abf6b7f345ff89 *R/integrate_component.R
af8a757c7b7024e28745d348efbc68a8 *R/integrate_components_wrapper.R
102ff2978e35c73772e7f7b39bffc7b2 *R/mitey-package.R
63413e8cc0d81f010bf6aa03e71ca47b *R/plot_si_fit.R
1334bd7640d0e6448c0930569fdf87b0 *R/si_estim.R
0fd0ef369f1b4aa3f5893d2df53d9977 *R/wallinga_lipsitch.R
39bd58da1c2b653fc2efebbc4c5b0c5c *R/weighted_var.R
e3dbd83a65af4ebc11fb87a2b13c85cc *R/wl_helper_functions.R
b652055f1087d4a526e1dfa2cd43adb1 *R/wt_loglik.R
58b0030546dfee6b30fdff8aa804d259 *README.md
b52aabe9a2757fc86742763db9dafc9b *build/partial.rdb
f3aee8ddae726caa131d4bdf86c0ec42 *build/vignette.rds
1bc727698a5c29b7e6f68603041b9829 *inst/doc/quick_start_guide.R
28133e31e8d4524675d61c0ac168be5c *inst/doc/quick_start_guide.Rmd
59ea6c71cd9919c682865a489d22932a *inst/doc/quick_start_guide.html
1e36363e3f1d8e3a0a2ea6019da627dd *inst/extdata/data/Kaburi_et_al_data_scabies.xlsx
f567fd238c887620a46823daa814b599 *inst/extdata/data/scabies_data_consultations_weekly.xlsx
2b3d4b423e459f2c31c6994f14885ab0 *inst/extdata/data/scabies_data_incidence_yearly.xlsx
c2a11b5e12fcedc1659c26ca91fcc4ad *inst/extdata/data/si_data.rds
9c67c18be42b7c12865920278d97cd5f *man/calculate_bootstrap_ci.Rd
d86e0671b0b9f187912678bf7f7a2c5b *man/calculate_r_estimates.Rd
997e14d731b9066a41bf268393713373 *man/calculate_si_probability_matrix.Rd
f41728ff6f916edecaceec27237ec277 *man/calculate_truncation_correction.Rd
3279838c530254a39cdede9f161f28b9 *man/conv_tri_dist.Rd
615932c5c96e50a02aa6f5a2bfeaa111 *man/create_day_diff_matrix.Rd
24b3165c03d6fa53e5680ab6f19994ac *man/f0.Rd
c2cc5397529ee0dd925cbea5976723f7 *man/f_gam.Rd
f3967ea2248d2c69cd2f12df269f4d05 *man/f_norm.Rd
c30cec14afa3c53caa7bff76f1d7a686 *man/flower.Rd
cd1bc5ae4164487cd489ac476c8d098b *man/fupper.Rd
4a0645803ddbdcff8898da0d1a59afd3 *man/generate_case_bootstrap.Rd
eefd770d667cb28f6e94e47fa0d01dd1 *man/generate_synthetic_epidemic.Rd
80cca8ddf7173a6776fa226abba42bff *man/integrate_component.Rd
c87ed67868e6c02199634a703839bf47 *man/integrate_components_wrapper.Rd
65010b87113e40954a5e2d59b517c4f0 *man/mitey-package.Rd
917f0d814d3e2c4d3a469527148c2e14 *man/plot_si_fit.Rd
bbc70365f74700c89a7cfcff55482f3a *man/si_estim.Rd
887e7bf50990673d6935e6c06ab2c659 *man/smooth_estimates.Rd
304d32a88dceffff6fc53fddf07e6c87 *man/wallinga_lipsitch.Rd
66a4d0fd17256b9bd6ff22cb6a8c94d5 *man/weighted_var.Rd
f56c25f8d83479bae8fdba5e321d082c *man/wt_loglik.Rd
2d1a096c3887cba15777a967917ef919 *tests/testthat.R
5a318c250bfaea5282e916bc60782baf *tests/testthat/test-conv_tri_dist.R
cc011d638d5191d873628b9c7b3f341c *tests/testthat/test-si_estim.R
480b818e92d773d9999a4049c4028a5f *tests/testthat/test-test-integrate_components_wrapper.R
1f00a5e83651d267633a11470bd80d4a *tests/testthat/test-wallinga-lipsitch.R
5c0e46f9057c7d33b7550c13717d4d72 *tests/testthat/test-weighted_var.R
1828a51e9f0912b8ce5d67ce1b88742c *vignettes/appendix_references.bib
c5ba6a0a6817e9db0003ce0e2fa4ab4b *vignettes/data/rt_df_for_plot.rds
cc10247dd318c77fc8722f8f3303e916 *vignettes/data/rt_df_for_plot_sa.rds
80565f96c9e5e2d66622c0c50fac8fa1 *vignettes/data/rt_epiestim_gamma_si.rds
2a96e37ead9aab8a79c10a9f812ca770 *vignettes/data/rt_epiestim_normal_si.rds
352b43a8bb5388c883227dacc5d0887e *vignettes/data/rt_estimates_WL.rds
5f5f030d7d3d0d1b85eb1393ab1ba2d5 *vignettes/data/rt_estimates_WL_gamma.rds
0ee2c12c5fb72763bbe44b2a361f2f98 *vignettes/data/rt_estimates_ariza.rds
13b1bb8d5cd56723b606d4c8a9a916cc *vignettes/data/rt_estimates_kaburi.rds
2b3d4b423e459f2c31c6994f14885ab0 *vignettes/data/scabies_data_yearly.xlsx
4e9db325d70a1b5d4674905a274e74d1 *vignettes/data/scabies_gr_proj_df.rds
57375d864bf0a48f1f9a41d4249c6df2 *vignettes/data/si_data.rds
816297b39bdc7779f773a672be012952 *vignettes/data/validation_data.rds
c168e1a18948a0be599fb99a43fe0653 *vignettes/nature.csl
28133e31e8d4524675d61c0ac168be5c *vignettes/quick_start_guide.Rmd
532960e5275b35d6533fb493eee23048 *vignettes/quick_start_guide_refs.bib
8ba2bb856a2cca339e3cf7ab538dc251 *vignettes/references.bib
