756b31888bdbb7c809bbccdc9de8bbd3 *DESCRIPTION
26679356b5eb7794f672d8e254cf8ca5 *LICENSE
0dfc0d0eed0394df2f300923249bb31f *NAMESPACE
02faf4316e26ec1842207694452b822d *NEWS.md
95486e54cea329b9c2a2d9812b31d829 *R/data.R
4eda7ecabb2d06f2714105a2d1c374e7 *R/epitrax.R
0b63813f8eb205592fd31cd0cd21a7f4 *R/filesystem.R
ddf1b0172d6ea61f4ce4a5ca8ba86090 *R/helpers.R
14dbffb0040bac6fc48c05a395e71cd8 *R/reports.R
551d9b70e1ab82375449f8fca3b79159 *R/run_app.R
32a57385ba392a84d81a587f9cdb3b29 *R/validation.R
45ee33acc97c525b87f80f5332687c44 *README.md
195c5f428cbb71740df882114cbdfd02 *build/vignette.rds
6f0b147de6c7067456f64fa5315e3938 *inst/app/app.R
54592d896b9f519d32f8096123e7a884 *inst/doc/epitraxr.R
6cc6dd488c99c9b6433757c7f8f4eb27 *inst/doc/epitraxr.Rmd
67f0db7e274c5df50d0525e780827c7a *inst/doc/epitraxr.html
40c7bc19643c077f942ec8b741f13caa *inst/doc/piped-mode.R
b3bec8e7ecbcd032dfcef2a616124a29 *inst/doc/piped-mode.Rmd
94cc46aadd450efe1cbee7c8bfbee679 *inst/doc/piped-mode.html
bea3503712b694cf71a6a0d925c40e2e *inst/report_formats/general_report.Rmd
048642d79090738bef0219ed39c8e3f9 *inst/report_formats/grouped_report.Rmd
b2cbb393cf736bb4ef188193984daa58 *inst/sample_data/sample_config.yml
e022242d003413b8a0012eebea164dbe *inst/sample_data/sample_disease_list.csv
11466d1ca70c4587ba1d527b3a2c47c0 *inst/sample_data/sample_epitrax_data.csv
5cd172fe58e73eb206968e9c6f890caf *inst/tinytest/test_data.R
575782b1c37390638e447934a471302c *inst/tinytest/test_epitrax.R
111fd9d4269c40236481003064cbbc01 *inst/tinytest/test_files/configs/empty_config.yaml
b2cbb393cf736bb4ef188193984daa58 *inst/tinytest/test_files/configs/good_config.yaml
45d8eb4360e0e521bf27697c500393d3 *inst/tinytest/test_files/configs/invalid_config.yaml
11466d1ca70c4587ba1d527b3a2c47c0 *inst/tinytest/test_files/data/test_epitrax_data.csv
8c2ec76b42cdde5102953470cb576bc9 *inst/tinytest/test_files/disease_lists/internal_list.csv
5397732331492814e5e4d10855b3fc1a *inst/tinytest/test_files/disease_lists/invalid_list.csv
a19af4e63a7dc5232d28518c49af72ae *inst/tinytest/test_files/disease_lists/public_list.csv
d41d8cd98f00b204e9800998ecf8427e *inst/tinytest/test_files/reports/internal_report.csv
d41d8cd98f00b204e9800998ecf8427e *inst/tinytest/test_files/reports/public_report.csv
9dad7948c50ae27bd6da56ae71b3ad2c *inst/tinytest/test_filesystem.R
2af8d263f629589667e43a1ee35088a5 *inst/tinytest/test_helpers.R
c8167de08beda9f3c801e1b6e83e84ca *inst/tinytest/test_reports.R
b54063059b3143ba228ac422e478f02d *inst/tinytest/test_validation.R
f23b5a23761d0f6e1f868ebc72747b8d *man/clear_old_reports.Rd
d72f7cb2e587ca84a750ef180184d5d0 *man/compute_trend.Rd
0fa833d9ebcf5619c4d287762b5e1c55 *man/convert_counts_to_rate.Rd
7490603cee361f741da87149d7267ed5 *man/create_epitrax_from_file.Rd
61c75e0442289061fc8937fd0148ab37 *man/create_filesystem.Rd
01ba039fcc01c8cef4c6e749eef38bdc *man/create_public_report_combined_month_ytd.Rd
7cac6c266f841a2bbcdba27c2691d0a8 *man/create_public_report_month.Rd
418c313a2a7e83269fee737ddfb376ea *man/create_public_report_ytd.Rd
6d497c1513257a5210df14aa97ae8ab9 *man/create_report_annual_counts.Rd
d23c6f746fccd888ede6f4ac2dead593 *man/create_report_grouped_stats.Rd
b3db1d31dfce3a5638e8fb32b32ea423 *man/create_report_monthly_avgs.Rd
a3fcefc531678c650f33cdea555ba60b *man/create_report_monthly_counts.Rd
327a57e60b6b143016144f94df403a5b *man/create_report_monthly_medians.Rd
c41668b0e12fa488a41ecade767573a5 *man/create_report_ytd_counts.Rd
c55372def53bc0dad119e5140a71566a *man/create_report_ytd_medians.Rd
7848c1d0f3eab8f44293d3a430e0d9ad *man/epitrax_ireport_annual_counts.Rd
f71915239c04a2d8a9b616663a5e8e27 *man/epitrax_ireport_monthly_avgs.Rd
ef69f0ab92ff7a4a4c9dc77b85aa4a6d *man/epitrax_ireport_monthly_counts_all_yrs.Rd
881f7ad4c932184e77d19fa9a6b88b2f *man/epitrax_ireport_ytd_counts_for_month.Rd
9b79b89b6f37c63a172535e2ebc4be13 *man/epitrax_preport_combined_month_ytd.Rd
72877744a81204c31b826552e290704e *man/epitrax_preport_month_crosssections.Rd
402ae39124d27325fa7dc1579abd8a50 *man/epitrax_preport_ytd_rates.Rd
279b0ddb13e16fe73b571cfa962c109b *man/epitrax_report_grouped_stats.Rd
bc30be11dab331f3091d30081979d146 *man/epitrax_report_monthly_medians.Rd
55dcf8e573cea3bb5d896b6ecca9afec *man/epitrax_report_ytd_medians.Rd
829523372a0c5489c41678216a9ea1e1 *man/epitrax_set_config_from_file.Rd
f38c7864580e19e325d2b10c774d9f1d *man/epitrax_set_config_from_list.Rd
664ee8f8cfb7533c6e4c1aa66d4c345a *man/epitrax_set_report_diseases.Rd
7321504a9bd4607f3fcaffb0ecc7f75e *man/epitrax_write_csvs.Rd
866a076fea00c4c38c2bd712406d292a *man/epitrax_write_pdf_grouped_stats.Rd
5442157f67309987c677671fbc4fe706 *man/epitrax_write_pdf_public_reports.Rd
df8f1ffdf95169164ace0dd300f68b7f *man/epitrax_write_xlsxs.Rd
c925057e1815dcf8e888d9e53b02a489 *man/epitraxr_config.Rd
217ae5dc67d013b41d4b1a09646b793a *man/format_epitrax_data.Rd
9f917f9318cf8e6c67bafa370174f611 *man/get_month_counts.Rd
e08a900e939c5adb89e9c205126ed986 *man/get_report_config.Rd
9ad794249252578e9bdc576dab0fe106 *man/get_report_diseases.Rd
9390d255a5c5c48b1713b71a937f3291 *man/get_report_diseases_internal.Rd
5b6d9917676be128775223f67788c8c9 *man/get_report_diseases_public.Rd
d6ad20adae3c5e179553fc1727498aa7 *man/get_yrs.Rd
69c90f99858e5e0c979c09b87fe65773 *man/mmwr_week_to_month.Rd
0d0a90c56938eb2920a8441b67a89d83 *man/read_epitrax_data.Rd
9eaae9c93ae37285bdd406d07c1aaad6 *man/reshape_annual_wide.Rd
fcb35bc53a6438140f23e083a8d5cd83 *man/reshape_monthly_wide.Rd
3878235006ce575f01ca0803125056e9 *man/run_app.Rd
b9a872dcd8ba844dd9c9946f32417b7e *man/set_na_0.Rd
f22c1ef966c91c004541e884cda12088 *man/setup_epitrax.Rd
c2ae8391ee8f670d958e565e4be338bd *man/setup_filesystem.Rd
096d2d767516545c884bc3c02339adc0 *man/standardize_report_diseases.Rd
e9c1bdf0df8143690868f823420b6c58 *man/validate_config.Rd
dc0022624dd0737369ad02d1c22aabf6 *man/validate_data.Rd
57dde009a4185041d044efb2368753f5 *man/validate_epitrax.Rd
fd06995292d46a71fda6745dc267ec94 *man/validate_filesystem.Rd
c58032a9962fde3ce688a44e2fc2dfd7 *man/write_report_csv.Rd
ec1c5b0df659bd16fa80d6513b8e7c34 *man/write_report_pdf.Rd
bd8e4b9084901dd1a77d83dd245949c5 *man/write_report_pdf_grouped.Rd
19023508a6de0be8ea7fd05140889826 *man/write_report_xlsx.Rd
ed7fd3ce6fbb4223c8a2d26fc84e89c5 *tests/tinytest.R
6cc6dd488c99c9b6433757c7f8f4eb27 *vignettes/epitraxr.Rmd
b3bec8e7ecbcd032dfcef2a616124a29 *vignettes/piped-mode.Rmd
1933d3cc1b20d56710fb590e44475215 *vignettes/vignette-data/config.yaml
debe31c72fc6570dc56d6799ded545fb *vignettes/vignette-data/epitrax_data.csv
2c562b667c071593948bc0bc5cad0234 *vignettes/vignette-data/ireport_diseases.csv
1be000754149266d7c421766c2e427c0 *vignettes/vignette-data/preport_diseases.csv
