1685c6850ade1fe4b6bc1315bba1f50d *DESCRIPTION
a48f38940436b5aaf6537a61eca0bfd7 *NAMESPACE
03918727463540d9b0880594bff5cb00 *NEWS.md
8cc075ce7082038769ff3f9fb21750ba *R/CheckDiemFormat.r
c58333c432b8a1b65d5096d0865426db *R/ModelOfDiagnostic.r
b7fa028a35f82becc41a001b4bfa8468 *R/diem.r
25b45ebef278b1512cf58b010d5f7331 *R/emPolarise.r
cf8816067567ea450a0930accab43630 *R/extdata.r
662be911032a43b66b1d3d4964b9b642 *R/hybridIndex.r
cde68f0f400da3e56168da1eaec2f08f *R/importPolarized.r
a4a7352f39f9a5c4627de8efd10ea432 *R/internal.r
1c0f2efef90021beaa40ed7fe974527e *R/pHetErrOnStateCount.r
971544c388565ef1b286d61d88bae6ce *R/plotDeFinetti.r
28063837fa698a86bbca9cca8d73ec11 *R/plotMarkerAxis.r
265c54056e4e575352357c7baeeeb940 *R/plotPolarized.r
a7ee2169d0ad7a935849d7661e359fc0 *R/rank2map.r
3be3331573f5a9954478e198bb5674bc *R/sStateCount.r
423dddd26178bfd0f15f2a4606c81d14 *R/smoothPolarizedGenotypes.r
ad6b166d43e18289c6e410d91e90815f *R/variantSites.r
e7edb0d07dcf532a0f2f2c8730351719 *R/vcf2diem.r
86740f711908d319f58f79187e4569d6 *README.md
b3f6dda199be64d0ee557e5191650a45 *build/vignette.rds
62f40a252d9907d9557947ec13f7a006 *inst/CITATION
bf5ed8d0211e30a3e18c08ffbb2c1246 *inst/doc/Importing-data-for-genome-polarisation.R
1d086ab37f064460fe61560b6a81cfe2 *inst/doc/Importing-data-for-genome-polarisation.Rmd
d7e68f669fd0e11e79abc4d346548fbe *inst/doc/Importing-data-for-genome-polarisation.html
03ed78ba30051f289a928aa8ba47def0 *inst/doc/Understanding-genome-polarisation-output-files.R
97313c5eb9d612104957e6dad2361192 *inst/doc/Understanding-genome-polarisation-output-files.Rmd
6d16cd683bc26ec6b3340a6c8d68d4c8 *inst/doc/Understanding-genome-polarisation-output-files.html
52eba2c19f663111410c3f337e5aebd0 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.R
c43ee82deec4f0638b017f2c1f7f5095 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd
e46f1672d602a2d453e6f5c745a44706 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html
67e554b1c00509ebeb65d8447c6d4d87 *inst/extdata/brenthis.vcf
06575e9e6a223a800c78ade995220bc8 *inst/extdata/data7x10.txt
b8f49ea8d12ffb825b82e4f25619553a *inst/extdata/data7x3.txt
495549483e4157b4105c8053357170b5 *inst/extdata/myotis.vcf
8f0396b8c6b2b0283b43e446e73ac080 *inst/extdata/testBarrier.txt
81d1eab7e755a0d0c7449586ffacba43 *inst/extdata/testBarrier2.txt
59d690166d08a2ccd4bb5910ecbebcea *inst/extdata/testdata.vcf
137b08fa9b0f2e4585e5d7b080605c5b *man/CheckDiemFormat.Rd
2dc7d34729ec3cd227f15f49a0c1c2e7 *man/ModelOfDiagnostic.Rd
c5302a20650013ab385cf3a43c919401 *man/brenthis.Rd
7fe9515daf448a0dc4d94f446eb24684 *man/diem.Rd
1500d8b91eab46424c18c919789dbac5 *man/emPolarise.Rd
9ff90346b04bb72387174187d9bdf9fb *man/hybridIndex.Rd
b55db5972dcb6b76ed336ed7f497fb19 *man/importPolarized.Rd
b8edf4a1cc80a48ce429292860cfdc19 *man/markerAxis.Rd
a827f6e87a5f8cdb8124920992bd2436 *man/myotis.Rd
d658b0e5c00768c6768706d0fd941f4e *man/pHetErrOnStateCount.Rd
558a10671c5aabe39c37d331eec02d50 *man/plotDeFinetti.Rd
960163df07c42817511fcf7f070c08f5 *man/plotMarkerAxis.Rd
869103ec255c78504a33928b57b2b394 *man/plotPolarized.Rd
816952ab190be3faa2ead0682c491d76 *man/rank2map.Rd
c870f384c209eb4db781696e5fd2be88 *man/rank2mapChr.Rd
bca1c14fe5bbfd6ff703cf197723299f *man/readIncludedSites.Rd
3cb0e52ae5eaaeca3aeeb537672ea523 *man/resolveCompartments.Rd
10cf23da1850c60706583ac85e680f10 *man/sImport.Rd
60d28fbd537c27e23b27c1900675ddf7 *man/sStateCount.Rd
7ff61955456d6e9ffb11fbe8a4970fd0 *man/smoothPolarizedGenotypes.Rd
2e7317858013a54e72c8f72e32a1982e *man/testdata.Rd
993e96615ae068317488e6e017c7cd68 *man/truncatedLaplace.Rd
277e114f216638b23785b6086260b133 *man/unbiasedWeightedStateChoice.Rd
b3345bc682a4ec74d863931a8848f508 *man/variantSites.Rd
a04dfb5f464439313a56ce555ff2880f *man/vcf2diem.Rd
dc2dfdb6f5e44147dfd11b24055b3bbd *tests/testthat.R
7332d4caa92a36bb0b8aefddc828218e *tests/testthat/_snaps/vcf2diem.md
3c665600bee8ab222360b9401afa6be7 *tests/testthat/test_CheckDiemFormat.r
026c64429a868ecee9c0549045afdec4 *tests/testthat/test_ModelOfDiagnostics.r
45ef407f4b56690bb34fe7a0e75cc760 *tests/testthat/test_emPolarise.r
edd0114dbd7f9c3e94e4f8df12aedacb *tests/testthat/test_hybridIndex.r
315a9ddab3f767411f48a5f07748f00f *tests/testthat/test_importPolarized.r
db0a652552b4b7308b28de914a501ea5 *tests/testthat/test_internal.r
39fe6a0d10304161b48818c79b00cb3d *tests/testthat/test_pHetErrOnStateCounts.r
1990429e7f01fc3d5ceaf5df8b31b05f *tests/testthat/test_plotPolarized.r
36af00b1ba42764fead29fc5405d6f9c *tests/testthat/test_vcf2diem.r
1d086ab37f064460fe61560b6a81cfe2 *vignettes/Importing-data-for-genome-polarisation.Rmd
97313c5eb9d612104957e6dad2361192 *vignettes/Understanding-genome-polarisation-output-files.Rmd
342ac9c0978ec5b576eaa114bd2d03b9 *vignettes/diemOutput.png
c43ee82deec4f0638b017f2c1f7f5095 *vignettes/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd
ada6c5be0db8ab45f3d09cba52421af2 *vignettes/refs.bib
