742eaf6206fff024c7e288b488f06dda *DESCRIPTION
413fe8c26932b250cb8d80bd808da2ea *NAMESPACE
048ca3519c833320fb130a06e888b1fc *NEWS
a0621c04357f45c412eaf8676390194c *R/accessors.R
bd8d901b98abc42a4f2a2b0636caf28a *R/add.gaps.R
1949a8fe6ed2777fd55b4ee384f0cc68 *R/concatenate.R
03a3f74a056bb6892801cdc1b861a362 *R/datasets.R
4f69de110fd20dd36aee1b17d6e26e95 *R/dist.R
b4fe12876c37f8a22cde06e9701eecf0 *R/doc.R
548a774b3192f348e221a76432255d04 *R/exports.R
b80a27b5831f4e2594d5db38e4d480f2 *R/getTree.R
4403c757553d0637b30d5e3674045b2e *R/internal.R
59ff39655b8dff0678bf46fbd7428d6f *R/multidna.class.R
3fb5c6dca7106da8470d765ffa096734 *R/multidna.constructor.R
46404087bfe7221322f26c90b9ea6f9f *R/multiphyDat.class.R
bddf4d53db39831c69ca149f20bfd133 *R/multiphyDat.constructor.R
47ea47027137c8e4c24e0963cd4be8c6 *R/plot.R
38e9785193d4fb4eabb7a2937e9335a2 *R/readfiles.R
86d226e0854ba820197cd8b73e1e0da5 *R/rm.gaps.R
235736a49d05f1125763abc1a40418e4 *R/show.R
f9c4eae8d7e808f31cbd77c99f75a50a *R/subset.R
81e4dbe26692de7c6b540334b20f48db *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
a0ad6f4035edba0f9abcf16f59503a5f *build/vignette.rds
1619f427cbc53fc18f9eba9c59f2715f *inst/doc/apex.R
d29f02f178f6c424ffb4294720b5ca13 *inst/doc/apex.Rmd
86b8814a6dc659ad690549e64c0af932 *inst/doc/apex.html
9153e1e71df1d0ffdaee7e69f291b93b *inst/patr_poat43.fasta
49ae6851973377bde9287e1f12e17039 *inst/patr_poat47.fasta
80b8bdab91a3bd769896fb921d670562 *inst/patr_poat48.fasta
b261f01a6b74f7ef51f605faac4fd68f *inst/patr_poat49.fasta
2bba2766ebf032d20dcae8935a01042e *man/accessors.Rd
592ff2f18d9ce8b16a15545422e70aeb *man/add.gaps.Rd
2e344eb93a4144982114e363fb4bf877 *man/apex-package.Rd
c8cd7e280c2b5c830836c13b6857a2f2 *man/concatenate.Rd
0bf2cf1b46ab8c0f80d33c89473cfb28 *man/dist.multidna.Rd
dd11b29c161d555c43a59d09b4e358bc *man/getTree.Rd
838ec3cc96f3eb648ca357afc6bbd357 *man/initialize-multidna-method.Rd
57f3ceb09ad923ba655d1b46b252fad5 *man/initialize-multiphyDat-method.Rd
5d5b0d91bd8948042b74075c077fd99b *man/multidna.Rd
44468e3b26226f10d75df9d7a1e26622 *man/multidna2alignment.Rd
c972236761a227ae2f4cea1a6a9c7399 *man/multidna2genind.Rd
3b3614176c7bddf41c954c49090246bf *man/multidna2multiphyDat.Rd
3d58b74f373db9727403140ba23416be *man/multiphyDat.Rd
c10920927edb20e3bfa53973db8d781a *man/plot-multidna-method.Rd
0afd9097af5c1094aba29461edc42a74 *man/readfiles.Rd
b9db47b8573d24a8fb84b348fc7c1f89 *man/rm.gaps.Rd
3eae268962aa588930c6189e987c4c52 *man/show-multidna-method.Rd
1d3c069f60df1bfc08e62e4dc0823397 *man/show-multiphyDat-method.Rd
1308bcfbd8938a2efc781008b31ee198 *man/subset.multidna.Rd
77cae94d75d005e65dc4860894d61e2a *tests/testthat.R
0729339aeed636286b479f53621bcef7 *tests/testthat/test_export.R
d29f02f178f6c424ffb4294720b5ca13 *vignettes/apex.Rmd
f512f3d9d0de04c38c4496c1caf73e20 *vignettes/figs/class-1.png
4329f4dcb0537b6d5217953933822f99 *vignettes/figs/class-2.png
99c9c2be9826076bbc9288857c859a43 *vignettes/figs/concat-1.png
d56e682c1d32ef026acf3cc8aa373917 *vignettes/figs/concat-2.png
f1cb7401a56dc586e6b5b2951569db4e *vignettes/figs/handling-1.png
8259b892ecd3afb19478bd2fc642e149 *vignettes/figs/handling-2.png
c0259c67c87b5f9925057579a6566c1e *vignettes/figs/multidnaclass-1.png
c035f31512b145bb024199e193244db5 *vignettes/figs/multidnaclass-2.png
d1f222c2c4af3511c0886fe182ad7223 *vignettes/figs/plotMultiPhylo-1.png
e80ab02d4424747f3d40e2163b79e16a *vignettes/figs/plotPhyloSingle-1.png
3cd46e6ea91cfdc35286428e6e0245ba *vignettes/figs/plotPmlPart-1.png
f1cb7401a56dc586e6b5b2951569db4e *vignettes/figs/readfiles-1.png
