9d270780ecb304faebcc1cb027ab5e77 *DESCRIPTION
1c533f68696b23749018e44281a94778 *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
1964a3cc9a37c3db182162e4672398b2 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
81d35365beb6fa09099d37da0a52a0c8 *R/PGLS_fossil.R
3552629a0fb2f4c62ccc841d6526ac8e *R/RRphylo-defunct.R
121cd5d4ce1e1082cc0373a651148039 *R/RRphylo-deprecated.R
f2ab4a0232d86d8773a7463233e14389 *R/RRphylo-package.R
4969eed75d1020bf1c701f01fa7044b5 *R/RRphylo.R
33fe46831124a1889a77edee0f132478 *R/StableTraitsR.R
4d90e06a3ed0bb0bbd98e1b2da8f9697 *R/angle.matrix.R
84127e6929292f852abb7eebbceaffc5 *R/auxilliary.functions.R
0a791bd0b51c5c0d76044fbe402ca45a *R/colorbar.R
18b4b48b932e9626b4d2d954ef8b4a6f *R/compRates.R
cf2b70c754bb1333ca69a0803dfea6c7 *R/conv.map.R
5422a2f2a8cd3ecec24f50ebf225563b *R/cutPhylo.R
6de99468b820a032834c2eb4acae93d1 *R/distNodes.R
fb6d947281878c7d04ee89b5e4eca49b *R/evo.dir.R
c5cebf676f1d8e4a6deda9c4758252e3 *R/fix.poly.R
aef41edf6f6eb50092a20398be5b42c1 *R/geiger_functions.R
f318e60f3985a7b1eb7764777e36abc1 *R/getGenus.R
90e4021aacdcd1dc910da3c7475010fa *R/getMommy.R
3591715f8ac1f6b92a21a8dddc6bb5e2 *R/getSis.R
c56ce93a9f5d2d1611c6d8bec249afca *R/lollipoPlot.R
7e1cfbc899d305b84e572f21febc2ccf *R/makeFossil.R
c1f99e3d0a72106569b07795e5376fa7 *R/makeL.R
75d56a3e91203fab5ff89a988db5f863 *R/makeL1.R
76953523f588be4d5ee9370b3a3cc052 *R/move.lineage.R
5194a50556790e45b97566ceb9147d13 *R/namesCompare.R
2f4afb329449ff23d790724dded4e3d9 *R/node.paths.R
1b98f3a88305694ae8dcc2cd578a9754 *R/overfitPGLS.R
a24e573999363d2aba2f23e22d08c59e *R/overfitRR.R
174426ce8979419d44eb0fd2b782aa6c *R/overfitSC.R
8e16c86e37bf0433ecefd9c11c002e1a *R/overfitSS.R
b8609c6dd864a4847a7bf471f709b412 *R/overfitST.R
59d880c205f4da6a412bc16b2f4eb71b *R/phyloclust.R
be612fa460e794589be3798fd3ef913e *R/plotConv.R
9fb2616c92627290e78ef5f603c505bf *R/plotRR.R
49086263d2c82ac2a3e0fda20cad3ddd *R/plotRates.R
45de88ea5632c06d184f9cb8c34878ba *R/plotShift.R
ad138269f370b6687a3f4854e5cbab49 *R/plotTrend.R
157475be86f31829305375f102c32c89 *R/print.RRphyloList.R
93f0ac8a7e013623771d100fd03b987b *R/random.evolvability.test.R
d24c9dff48223339e3317a8c1de70e2f *R/rate.map.R
e82e793ef25990f65d474bb42e5d22f0 *R/rateHistory.R
60d85b4bbe3d41b3fa9c15f2f2666584 *R/resampleTree.R
ede24cb099c341fd58c44dadce07da00 *R/rescaleRR.R
ce4aa5f7a2c2be2c9c4fb56a7a23feaa *R/retrieve.angles.R
d3000a3ec434a34cbc91c88aeafb93e9 *R/scaleTree.R
3b9fe80d034a773730f2932f8f8c0530 *R/search.conv.R
f9a7f7254f199371221fe017f09f0142 *R/search.shift.R
63cc43e41ff5691cd715aa9c3647a001 *R/search.trend.R
a3d9691866aa30e1fbbe38d2fee1edbb *R/setBM.R
ed0df60cbc90a134fcda16d828e6f408 *R/sizedsubtree.R
5878a41266ce0336c809ad65bba78c43 *R/swap.phylo.R
1bb8f2647fb1a6ed748d6ae31663d1f9 *R/swapONE.R
c9dd82f8daafa14a19dc5706b8317353 *R/tree.merger.R
fa029521fbfce8aa20b39be3aadfdc44 *R/treeCompare.R
9931707e88c23d4a8495751c46206e47 *README.md
baa4b8b09a79645ab128cfeae6994308 *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
4bdfed4f933a661269de19613950a536 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
ac6a9e78bbc4d8a27412c08473f0f371 *inst/CITATION
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cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
4b5df48397678deef630b2bb5fbefe44 *man/DataFelids.Rd
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a847da11baa26e542ebbc453389dc0c5 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
80515f26d274506d5bb0215dea1106e3 *man/PGLS_fossil.Rd
62df4959b47ea744b6364e4665ad6932 *man/RRphylo-defunct.Rd
b1c00ca093e7f3477df3255244cf9522 *man/RRphylo-deprecated.Rd
8cf785ac2c9bf9b8a60648de1bd6ade7 *man/RRphylo-package.Rd
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14c21c819811a5dd7119d11c2ee06b1b *man/StableTraitsR.Rd
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5d9e16702e8a25d74fabd9857261e4ce *man/colorbar.Rd
8d56a419c48855ce93d927c7d8fde819 *man/compRates.Rd
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77ce9feda261d0f223f3a1d25e667177 *man/cutPhylo.Rd
eb11084350b311fb6c03092ee6a571f2 *man/distNodes.Rd
9e169ce02479d19ce009b334ae8007dd *man/evo.dir.Rd
37444eeee82979c338b0ca1426dcb127 *man/fix.poly.Rd
a4752303c5e41ba2dd9ab3243cda8ddd *man/getGenus.Rd
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7a9c179a89b762da9e2cc1e16907a75a *man/getSis.Rd
f68c9adb5983c38aa85579ed17a18ea7 *man/lollipoPlot.Rd
eb5736a8790afe0f39bbed5ae39cfb40 *man/makeFossil.Rd
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7a4f58a1b2b7a844e4a20ada58292073 *man/move.lineage.Rd
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8a123cc369bd0ebd3cb0e4008d848241 *man/overfitPGLS.Rd
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6e5ce97d57e654253558a3745d2944e8 *man/overfitSC.Rd
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0da9432c5498f4abd2ebc5a6c4cc7f4b *man/overfitST.Rd
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2c7c687a682d57bda517782768bbab90 *man/plotRR.Rd
0372b9a3267efb927739037c7c09fa3f *man/plotRates.Rd
931a3d5b1ca8d95a0d91c6e102903d38 *man/plotShift.Rd
338ed5fcb442117329be59d859ab3e33 *man/plotTrend.Rd
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cc5e45b3ffbc138bccc6f560f9e1e933 *man/rate.map.Rd
4544e73b280af5aa696a4621c5460988 *man/rateHistory.Rd
6be5cbde022ebfdd31bb460ee6fb1356 *man/resampleTree.Rd
45a21f633ae6e88d99af7cc878b5a97d *man/rescaleRR.Rd
7b958ffe28a2222d3171c25840bc2ca8 *man/retrieve.angles.Rd
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7b5586de12ba347ae71059c4e68d9e55 *man/search.shift.Rd
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4ddef9a5d4a674ab999b10e17f4e4436 *man/setBM.Rd
2a37945e873d4a65d0db0188de273ed3 *man/sig2BM.Rd
33f7b70e7bac30a96cb3a488051b9e59 *man/sizedsubtree.Rd
9f4cc115452a7826e292b19bf143a75b *man/swapONE.Rd
3bf180593c8c003ae40a08848e378450 *man/tips.Rd
f7e5f30c5b03411f7ff2557606da65ce *man/tree.merger.Rd
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51ecbb16c373f72d2e6b3d8c7eb26c00 *man/treedataMatch.Rd
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062985e944ff3c07db72d5e6a4097c64 *vignettes/Plotting-tools.Rmd
93d427b220027c6a057280b681f4d154 *vignettes/RRphylo.Rmd
4230d29f8deea589a22757a806cb3582 *vignettes/Tree-Manipulation.Rmd
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2d13367f140518d9b268eface54c9fa4 *vignettes/functions4vignettes.R
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68d170da42d6f1c1f33d7a60eda02ad3 *vignettes/sc-data.Rda
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be768f07020d5280bb59c21dc265bc01 *vignettes/search.trend.Rmd
1988c29ffd2dbd78c8f8e55415c2add9 *vignettes/st-data.Rda
