AssessMonophyly         Assesses monophyly (or lack of it) of taxonomic
                        groups in a phylogeny.
CollapseMonophyletics   Get tree with collapsed monophyletic groups
GetAncNodes             Get MRCA nodes of taxonomic groups from
                        'AssessMonophyly' output
GetIntruderTaxa         Get taxa or tips which are intruders or
                        outliers to a taxon from AssessMonophyly
GetResultMonophyly      Get main result table from 'AssessMonophyly'
                        output
MonoPhy-package         Explore Monophyly of Taxonomic Groups in a
                        Phylogeny.
MonophylyData           Example dataset for the package MonoPhy.
PlotMonophyly           Plot output of AssessMonophyly
