GATES2                  Gene-based Association Test that uses an
                        extended Simes procedure (GATES) for single
                        trait - SNP set association
GEEaSPU                 The SPU and aSPU tests for multiple traits -
                        single SNP association in generalized
                        estimating equations.
GatesSimes              GATES-Simes test for single trait - pathway
                        association.
Hyst                    HYST (Hybrid Set-based Test) for single trait -
                        pathway association
MTaSPUs                 The SPU and aSPU tests for multiple traits -
                        single SNP association with GWAS summary
                        statistics.
MTaSPUsSet              gene-Multitrait Sum of Powered Score
                        (MTSPUsSet) tests and adaptive MTSPUsSet
                        (MTaSPUsSet) test for multi trait - SNP set
                        association with GWAS summary statistics.
MTaSPUsSetPath          Multitraits - Pathway based Sum of Powered
                        Score tests (MTSPUsSetPath) and adaptive
                        MTSPUsSetpath (MTaSPUsSetPath) test for multi
                        trait - pathway association with GWAS summary
                        statistics.
MTaSPUsSetScore         gene-Multitrait Sum of Powered Score
                        (MTSPUsSetScore) tests and adaptive MTSPUsSet
                        (MTaSPUsSet) test for multi trait - SNP set
                        association with GWAS summary statistics.
                        (Score version added)
SAMD11                  An example data for MTaSPUsSet test
aSPU                    Sum of Powered Score (SPU) tests and adaptive
                        SPU (aSPU) test for single trait - SNP set
                        association.
aSPUd                   Adaptive Sum of powered score (SPU) tests (SPU
                        and aSPU) based on asymptotic distribution.
aSPUpath                Pathway based Sum of Powered Score tests
                        (SPUpath) and adaptive SPUpath (aSPUpath) test
                        for single trait - pathway association.
aSPUpath2               Pathway based Sum of Powered Score tests
                        (SPUpath) and adaptive SPUpath (aSPUpath) test
                        for single trait - pathway association. (vector
                        version, fast when n is large)
aSPUr                   Robust Sum of powered score (SPU) tests and
                        aSPU test for a quantitative trait
aSPUs                   Sum of Powered Score (SPUs) tests and adaptive
                        SPU (aSPUs) test for single trait - SNP set
                        association with GWAS summary statistics.
aSPUsD                  Sum of Powered Score (SPUs) tests and adaptive
                        SPU (aSPUs) test for single trait - SNP set
                        association with GWAS summary statistics
                        (distribution based).
aSPUsPath               Pathway based Sum of Powered Score tests
                        (SPUsPath) and adaptive SPUpath (aSPUsPath)
                        test for single trait - pathway association
                        with GWAS summary statistics.
aSPUsPath2              Pathway based Sum of Powered Score tests
                        (SPUsPath) and adaptive SPUpath (aSPUsPath)
                        test for single trait - pathway association
                        with GWAS summary statistics. (vector version,
                        fast when n is large)
aSPUw                   Inverse variance weighted Sum of Powered Score
                        tests (SPUw) and adaptive SPUw (aSPUw) test for
                        single trait - SNP set association.
estcov                  estcov
exdat                   An example data set
getlogitp               Get the p-values of the multiple SNPs based on
                        the Wald test in a logistic regresion model.
kegg9                   A subset of coronary artery disease (CAD) data
minP                    minP test.
plotPmat                Image plot of P-value matrix.
pruneSNP                Prune SNPs (related to aSPUs, aSPUsPath,
                        MTaSPUsSet)
simPathAR1Snp           Simulating a pathway with multiple SNPs.
someGs                  An example data for MTaSPUsSet test
