citHeader("To cite RRphylo implementations and auxilliary functions in publications use:")

bibentry(bibtype        = "Article",
         header       = "RRphylo package, search.shift, and auxilliary functions",
         title        = "A new method for testing evolutionary rate variation and shifts in phenotypic evolution.",
         author       = c(person("Silvia Castiglione"),
                                   person("Gianmarco Tesone"),
                                   person("Martina Piccolo"),
                                   person("Marina Melchionna"),
                                   person("Alessandro Mondanaro"),
                                   person("Carmela Serio"),
                                   person("Mirko Di Febbraro"),
                                   person("Pasquale Raia")),
         journal      = "Methods in Ecology and Evolution",
         year         = "2018",
         volume       = "9",
         pages        = "974-983",
         doi          = "10.1111/2041-210X.12954",
         textVersion  = paste("Castiglione, S., Tesone, G., Piccolo, M., Melchionna, M., Mondanaro, A., Serio, C., Di                            Febbraro, M., & Raia, P.(2018).",
                        "A new method for testing evolutionary rate variation and shifts in phenotypic evolution.",
                        "Methods in Ecology and Evolution, 9: 974-983.",
                        "doi:10.1111/2041-210X.12954")
)



bibentry(bibtype        = "Article",
         header       = "multiple regression version of RRphylo",
         title        = "Macroevolution of toothed whales exceptional relative brain size.",
         author       = c(person("Carmela Serio"),
                                   person("Silvia Castiglione"),
                                   person("Gianmarco Tesone"),
                                   person("Martina Piccolo"),
                                   person("Marina Melchionna"),
                                   person("Alessandro Mondanaro"),
                                   person("Mirko Di Febbraro"),
                                   person("Pasquale Raia")),
         journal      = "Evolutionary Biology",
         year         = "2019",
         volume       = "46",
         pages        = "332-342",
         doi          = "10.1007/s11692-019-09485-7",
         textVersion  = paste("Serio, C., Castiglione, S., Tesone, G., Piccolo, M., Melchionna, M., Mondanaro, A., Di                            Febbraro, M., & Raia, P.(2019).",
                        "Macroevolution of toothed whales exceptional relative brain size.",
                        "Evolutionary Biology, 46: 332-342.",
                        "doi:10.1007/s11692-019-09485-7")
)



bibentry(bibtype        = "Article",
         title        = "Macroevolutionary trends of brain mass in Primates.",
         author       = c(person("Marina Melchionna"),
                                   person("Alessandro Mondanaro"),
                                   person("Carmela Serio"),
                                   person("Silvia Castiglione"),
                                   person("Mirko Di Febbraro"),
                                   person("Lorenzo Rook"),
                                   person("José Alexandre Diniz-Filho"),
                                   person("Giorgio Manzi"),
                                   person("Antonio Profico"),
                                   person("Gabriele Sansalone"),
                                   person("Pasquale Raia")),
         journal      = "Biological Journal of the Linnean Society",
         year         = "2020",
         volume       = "129",
         pages        = "14-25",
         doi          = "10.1093/biolinnean/blz161",
         textVersion  = paste("Melchionna, M., Mondanaro, A., Serio, C., Castiglione, S., Di Febbraro, M., Rook, L.,Diniz-Filho,J.A.F., Manzi, G., Profico, A., Sansalone, G., & Raia, P.(2020).",
                        "Macroevolutionary trends of brain mass in Primates.",
                        "Biological Journal of the Linnean Society, 129: 14-25",
                        "doi:10.1093/biolinnean/blz161")
)



bibentry(bibtype        = "Article",
         header       = "Ancestral state integration in RRphylo (RRphylo-noder)",
         title        = "Ancestral State Estimation with Phylogenetic Ridge Regression",
         author       = c(person("Silvia Castiglione"),
                                   person("Carmela Serio"),
                                   person("Alessandro Mondanaro"),
                                   person("Marina Melchionna"),
                                   person("Francesco Carotenuto"),
                                   person("Mirko Di Febbraro"),
                                   person("Antonio Profico"),
                                   person("Davide Tamagnini"),
                                   person("Pasquale Raia")),
         journal      = "Evolutionary Biology",
         year         = "2020",
         volume       = "47",
         pages        = "220-232",
         doi          = "10.1007/s11692-020-09505-x",
         textVersion  = paste("Castiglione, S., Serio, C., Mondanaro, A., Melchionna, M., Carotenuto, F., Di Febbraro, M., Profico, A., Tamagnini, D., & Raia, P. (2020).",
                        "Ancestral State Estimation with Phylogenetic Ridge Regression.",
                        "Evolutionary Biology, 47: 220-232.",
                        "doi:10.1007/s11692-020-09505-x")
)



bibentry(bibtype = "Article",
         title        = "Simultaneous detection of macroevolutionary patterns in phenotypic means and rate of change                          with and within phylogenetic trees including extinct species.",
         header       = "search.trend",
         author       = c(person("Silvia Castiglione"),
                                   person("Carmela Serio"),
                                   person("Alessandro Mondanaro"),
                                   person("Mirko Di Febbraro"),
                                   person("Antponio Profico"),
                                   person("Giorgia Girardi"),
                                   person("Pasquale Raia")),
         journal      = "PLoS ONE",
         year         = "2019",
         volume       = "14",
         pages        = "e0210101",
         doi          = "10.1371/journal.pone.0210101",
         textVersion  = paste("Castiglione, S., Serio, C., Mondanaro, A., Di Febbraro, M., Profico, A., Girardi, G.,                         & Raia, P.(2019).",
                        "Simultaneous detection of macroevolutionary patterns in phenotypic means and rate of change                          with and within phylogenetic trees including extinct species.",
                        "PLoS ONE, 14: e0210101.",
                        "doi.org/10.1371/journal.pone.0210101")

)



bibentry(bibtype        = "Article",
         header       = "search.conv",
         title        = "A new, fast method to search for morphological convergence with shape data.",
         author       = c(person("Silvia Castiglione"),
                                   person("Carmela Serio"),
                                   person("Davide Tamagnini"),
                                   person("Marina Melchionna"),
                                   person("Alessandro Mondanaro"),
                                   person("Mirko Di Febbraro"),
                                   person("Antonio Profico"),
                                   person("Paolo Piras"),
                                   person("Filippo Barattolo"),
                                   person("Pasquale Raia")),
         journal      = "PLoS ONE",
         year         = "2019",
         volume       = "14",
         pages        = "e0226949",
         doi          = "10.1371/journal.pone.0226949",
         textVersion  = paste("Castiglione, S., Serio, C., Tamagnini, D., Melchionna, M., Mondanaro, A., Di Febbraro, M., Profico, A., Piras, P.,Barattolo, F., & Raia, P. (2019).",
                        "A new, fast method to search for morphological convergence with shape data.",
                        "PLoS ONE, 14, e0226949.",
                        "doi:10.1371/journal.pone.0226949")
)



bibentry(bibtype        = "Article",
         header       = "fix.poly",
         title        = "The influence of domestication, insularity and sociality on the tempo and mode of brain size evolution in mammals.",
         author       = c(person("Silvia Castiglione"),
                                   person("Carmela Serio"),
                                   person("Martina Piccolo"),
                                   person("Alessandro Mondanaro"),
                                   person("Marina Melchionna"),
                                   person("Mirko Di Febbraro"),
                                   person("Gabriele Sansalone"),
                                   person("Stephen Wroe"),
                                   person("Pasquale Raia")),
         journal      = "Biological Journal of the Linnean Society",
         year         = "2020",
         volume       = "132",
         pages        = "221-231",
         doi          = "10.1093/biolinnean/blaa186",
         textVersion  = paste("Castiglione, S., Serio, C., Piccolo, M., Mondanaro, A., Melchionna, M., Di Febbraro, M., Sansalone, G., Wroe, S., & Raia, P. (2020).",
                        "The influence of domestication, insularity and sociality on the tempo and mode of brain size evolution in mammals.",
                        "Biological Journal of the Linnean Society, 132, 221-231.",
                        "doi:10.1093/biolinnean/blaa186")
)



bibentry(bibtype        = "Article",
         header       = "conv.map",
         title        = "A method for mapping morphological convergence on three-dimensional digital models: the case of the mammalian sabre-tooth",
         author       = c(person("Marina Melchionna"),
                                   person("Antonio Profico"),
                                   person("Silvia Castiglione"),
                                   person("Carmela Serio"),
                                   person("Alessandro Mondanaro"),
                                   person("Maria Modafferi"),
                                   person("Davide Tamagnini"),
                                   person("Luigi Maiorano"),
                                   person("Pasquale Raia"),
                                   person("Lawrence M. Witmer"),
                                   person("Stephen Wroe"),
                                   person("Gabriele Sansalone")),
         journal      = "Palaeontology",
         year         = "2021",
         volume       = "64",
         pages        = "573–584",
         doi          = "10.1111/pala.12542",
         textVersion  = paste("Melchionna, M., Profico, A., Castiglione, S., Serio, C., Mondanaro, A., Modafferi, M., Tamagnini, D., Maiorano, L. , Raia, P., Witmer, L.M., Wroe, S., & Sansalone, G. (2021).",
                        "A method for mapping morphological convergence on three-dimensional digital models: the case of the mammalian sabre‐tooth.",
                        "Palaeontology, 64, 573–584.",
                        "doi:10.1111/pala.12542")
)



bibentry(bibtype        = "Article",
         header       = "rate.map",
         title        = "Human face-off: a new method for mapping evolutionary rates on three-dimensional digital models",
         author       = c(person("Silvia Castiglione"),
                                   person("Marina Melchionna"),
                                   person("Antonio Profico"),
                                   person("Gabriele Sansalone"),
                                   person("Maria Modafferi"),
                                   person("Alessandro Mondanaro"),
                                   person("Stephen Wroe"),
                                   person("Paolo Piras"),
                                   person("Pasquale Raia")),
         journal      = "Palaeontology",
         year         = "2021",
         volume       = "65",
         pages        = "e12582",
         doi          = "10.1111/pala.12582",
         textVersion  = paste("Castiglione, S., Melchionna, M., Profico, A., Sansalone, G., Modafferi, M., Mondanaro, A., Wroe, S., Piras, P., & Raia, P. (2021).",
                        "Human face-off: a new method for mapping evolutionary rates on three-dimensional digital models.",
                        "Palaeontology, 65, e12582.",
                        "doi:10.1111/pala.12582")
)


bibentry(bibtype        = "Article",
         header       = "tree.merger",
         title        = "Fast Production of Large, Time-Calibrated Informal Supertrees with tree.merger",
         author       = c(person("Silvia Castiglione"),
                                   person("Carmela Serio"),
                                   person("Alessandro Mondanaro"),
                                   person("Marina Melchionna"),
                                   person("Pasquale Raia")),
         journal      = "Palaeontology",
         year         = "2022",
         volume       = "65",
         pages        = "e12588",
         doi          = "10.1111/pala.12588",
         textVersion  = paste("Castiglione, S., Serio, C., Mondanaro, A., Melchionna, M., & Raia, P.(2022).",
                        "Fast Production of Large, Time-Calibrated Informal Supertrees with tree.merger.",
                        "Palaeontology, 65, e12588.",
                        "doi:10.1111/pala.12588")
)
